Pseudomonas mediterranea: E3Z27_21340
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Entry
E3Z27_21340 CDS
T08284
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pmed
Pseudomonas mediterranea
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmed03009
]
E3Z27_21340 (rlmD)
Enzymes [BR:
pmed01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
E3Z27_21340 (rlmD)
Ribosome biogenesis [BR:
pmed03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
E3Z27_21340 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_31
Methyltr_RsmB-F
Cons_hypoth95
MTS
PCMT
Methyltransf_23
RrnaAD
Methyltransf_11
TRM5-TYW2_MTfase
DREV
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
QHA84021
LinkDB
All DBs
Position
complement(4919481..4920851)
Genome browser
AA seq
456 aa
AA seq
DB search
MAKHERGLRFQPSGGSRAPQVPTGKKQRLVIERLANDGRGIAFVDGRTWFVIGALAGEEV
EARVLGAHGKVVEARTERVFQASELRRAAPCIHAGRCGGCSVQHLPHDEQLALKQRMLAE
QLSRVAGVVPEEWAAPLSGPEFAYRRRARVAVRWDQKAKKLEVGFRAVGSQDIVAIGDCP
VLVQPLQPIMNRLPDMLRRLSKPQALGHVELFAGSSLAVLLRHMAPLSEADLTILKDFCA
FHGAQLWLHGEGEPQPVHAELTLGYRLDSWDLDLAYRPGDFIQVNAGVNEAMIAQALQWL
APRSEERVLDLFCGLGNFALPLARCVREVVAVEGVQTMVDRAAANALSNNLHNTAFFQAD
LSQPLAGAEWIGEGFSAVLLDPPRDGAFEVVRKLASLGAKRLVYVSCNPATLARDTVELI
KQGYRLKRAGILDMFPQTAHVEAMALFEASQDGLSD
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcatgaaagaggcttgcgcttccagcccagcggcggaagccgggccccacaa
gtgccgaccggcaagaaacagcgcctggtcatcgagcgcctggccaacgatggccggggc
atcgcgtttgtcgacgggcgtacctggttcgtcatcggcgccctggccggcgaagaggtc
gaggcgcgggtactgggtgcccatggcaaggtggtcgaggcgcgtaccgagcgggtgttt
caggccagcgaactgcgccgtgccgcgccgtgcatccatgccggccggtgtggcggttgc
agcgttcaacatctgccccacgacgaacagctcgccctgaaacagcgcatgctcgccgag
caactgtcgcgggttgccggtgtggtgccggaggaatgggccgcaccactaagcggaccg
gagttcgcttaccgacgccgggcccgcgtggcggtgcgctgggaccagaaagcgaagaaa
cttgaggtcggattccgcgccgtcggcagccaggacattgtcgccatcggcgattgcccg
gtgctggtacagcctttgcaaccgatcatgaatcgcttgccggacatgctccgccgcttg
agcaaaccccaggcgctgggccatgtggaattgttcgctggctcgtccctggcggtattg
ttgcggcacatggcgccgctgtcggaagccgacctgacgattctcaaggatttctgcgca
ttccatggcgcccaactgtggctgcacggcgaaggtgagccgcaaccggtccacgctgag
ttgaccctgggttatcgcctggacagctgggacctggacctggcttatcggccgggggat
tttatccaggtgaacgccggggtcaacgaggcgatgatcgcccaggcgctgcagtggctg
gcgccgcgatccgaggagcgggtgctggatctgttctgcggcctgggtaactttgccttg
ccgttggcccggtgcgtgcgcgaggtagtggccgtggagggcgtgcagaccatggtggac
cgcgcggcggccaatgccctcagcaacaatttgcataacactgccttttttcaggccgat
ttatcccagccactggcgggtgccgaatggatcggcgaaggcttttctgcggtactcttg
gacccaccccgtgacggtgctttcgaggtggtgcgcaagctggcgtccctgggcgccaaa
cggttggtttatgtatcgtgcaacccggcaactttggcccgggacacggtcgaattgatc
aagcagggctaccggttaaaacgtgccgggattctcgatatgtttcctcagacggcgcat
gtcgaggccatggcgttatttgaagcgagccaggatggcttgtccgactga
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