Pseudomonas mediterranea: E3Z27_23055
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Entry
E3Z27_23055 CDS
T08284
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pmed
Pseudomonas mediterranea
Pathway
pmed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3Z27_23055 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmed03019
]
E3Z27_23055 (rhlB)
Enzymes [BR:
pmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E3Z27_23055 (rhlB)
Messenger RNA biogenesis [BR:
pmed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E3Z27_23055 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QHA84331
LinkDB
All DBs
Position
5307149..5308615
Genome browser
AA seq
488 aa
AA seq
DB search
MTVLKALKKMFGKSEAEQLAPGPSAPVQGPSRTEAPQPSRHPAPVAQKKKEPATSPATAP
APDKPRNENPKPRRERAPKPPVVAWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFP
YCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISTITQLLQTPPPKERYMGEPRALII
APTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFN
QRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLA
RQWTTDPAIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDEV
RRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVI
NFTLPEVPDDYVHRIGRTGRAGAEGVSISFAGEDDSYQLPSIEALLGRKISCEMPPTHLL
RPVERKRH
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaagatgttcggtaagagcgaggccgagcagctcgcg
cccggccccagtgcccctgtccaaggcccgagccgtaccgaagcgccacaaccatcgcgc
caccctgcccctgttgcgcagaagaaaaaagagccggcgacctcccccgccaccgctcct
gcgccggacaagccgcgcaatgaaaaccccaagccgcgccgcgaacgagcaccgaaaccg
ccggtcgtcgcctggaagctcgaagacttcgtcgtagagccccaggaaggcaagacccgc
ttccacgatttcaagctggccccggaactgatgcatgccatccaggacctggggttcccg
tattgcacgccgatccaggcccaggtgctcgggtataccctcgccggcaaggacgctatc
ggtcgcgcccagaccggcaccggcaagaccgccgcgttcctgatttccaccatcacccag
ctgctgcagaccccgccccccaaagagcgctacatgggcgagccgagggcactgatcatc
gcgccgacccgcgagctggtggtgcagatcgccaaggacgccgccgacctgaccaaatac
accggcctgaacgtcatgacgttcgtcggtggcatggacttcgacaagcagctcaagcac
ctcgaagcccgtcattgcgacatcctggtggccacgcccggtcgcctgctggacttcaac
cagcgtggcgacgtgcacctggacatggtcgaggtcatggtgctggacgaggccgaccgc
atgctcgacatgggcttcatcccgcaagtgcgccagatcattcgccagaccccgccgaaa
agcgaacgccagaccctgctgttctccgccaccttcaccgaagacgtgatgaacctggcc
cggcaatggaccaccgacccggccatcgtcgagattgaagccgagaacgtcgccagcgaa
aacgtcgaacaacatatctacgccgtagccggtgccgacaagtacaagctgctctacaac
ctggtcaatgacaacggttgggaacgggtcatggtgttcgccaaccgcaaggacgaagtg
cggcgtatcgaagaacgcctggtgcgcgacggcgtcaacgcggcccagctgtcaggcgat
gtgccccagcacaagcgcatcaagacgctcgagggctttcgcgaaggcaaaatccgtgtg
ctggtggcaaccgacgtggccggccgcggcatccacatcgacggcatcagccatgtgatc
aacttcaccctgccggaagtaccggacgactacgtgcaccgcatcggccgtaccggtcgc
gccggcgccgagggcgtgtccatcagcttcgccggcgaggacgactcctatcagttgccc
tccatcgaagcgctgctgggtcgcaagatcagttgcgaaatgccgccgacccatctgctc
cggccggtcgagcgcaaacgtcactga
DBGET
integrated database retrieval system
