Pseudomonas mediterranea: E3Z27_24555
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Entry
E3Z27_24555 CDS
T08284
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pmed
Pseudomonas mediterranea
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmed03019
]
E3Z27_24555 (hrpB)
Enzymes [BR:
pmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E3Z27_24555 (hrpB)
Messenger RNA biogenesis [BR:
pmed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E3Z27_24555 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
AAA_30
HA2_N
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QHA84599
LinkDB
All DBs
Position
complement(5632565..5635081)
Genome browser
AA seq
838 aa
AA seq
DB search
MISLPIDEVLPALRQALASRHEAVLEAPPGAGKTTRVPLALLNEPWLAGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPSTRIEVVTEGILTRRLQDDPALEGVGL
LIFDEFHERSLDADLALALSLNGRELFREDQPLKILLMSATLEGERLAGLLDDAPILRSE
GRMFPVTVRWGRPFQPGEFIEPRLVQTVLEALHDETGSVLVFLPGQAEIRRVHQQLADAL
GEGGNVLLCPLHGELDLAAQRAAIDPAPPGLRKVVLATNIAETSLTINGVRVVVDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEQLAAYGSAEILS
ADLAGLALQLGRWGVTPQQLIWLDVPPGAAYAQAQDLLQRLGALEGEQLTRHGQAMAELP
AHPRIGHLLLRGQALGLADMACNVAALLGERDILRGAGADLHSRLALLSGEERAARGAQG
GVTRARQLARQYRGYLRGKAEEAVADPDHPRWLGALLALAYPDRVAQQRRPGGAEYRLAN
GRAALFAEADSLMKQPWLVIADLGSRQGQREERIYLATDFDPALFDSVLAEQVHTVDQLD
WDEREGVLRAERQRKVGELVLSREPLTGLDESARSQAMVNLVRRKGLELLPWTPELRQWQ
ARVALLRRLDLDAKGESEWPDVSDAALLGSLEHWLMPYLGRVSRLSHFANLDLSSIVHNL
LPWPLPQRLDEQAPHHLSVPSGSSIRLDYSEHPPILAVRLQELFGLADTPRIADGRQVVK
LHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARVKPRK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgatttctttgccgattgatgaagttttacctgccctgcgtcaagccttggcatcacgc
catgaagctgtgctcgaagcaccgcccggtgccggtaaaaccacccgcgttcccctggcc
ttgctgaacgagccgtggctggccggacagaccatcctgatgctcgagccccgacgcctg
gcggcacgggctgcggcggagcgattggccagtgaactgggtgaaaaggtcggtgaaacc
gtcggctaccggattcgcctggacagcaaggtgggcccaagcacccgtatcgaagtggtc
accgaagggatcctcacccgccgcctgcaggacgatccggcattggaaggtgtggggctg
ctgattttcgatgaattccacgagcgcagtctcgacgccgacctggccctggccttgagc
ctcaacggtcgggagctgtttcgcgaagaccagccgctgaagatcctgctgatgtcggcg
accctggagggcgagcgcctggccgggttgctggacgacgcgccgatcctgcgcagtgag
ggacggatgttcccggtgaccgtgcgctggggccgtccattccagcccggcgagttcatc
gagccgcggctggtgcagaccgtgctcgaagccctgcacgatgaaaccggcagtgtgctg
gtgtttctgcccgggcaggcggagatccgtcgggttcaccagcaactggccgatgccctg
ggcgagggcggtaacgtgctgctctgtccattgcacggtgaactggacctcgcggcccag
cgtgccgccattgacccggcgcctcctggcctgcgcaaagtggtgctggcgaccaacatc
gccgagaccagcctgaccatcaacggcgtgcgggtggtggtcgatgccgggctggcccgg
gttccacgtttcgacccgggcagcggcatgacccggctcgatacccagcgcatttcccgc
gccagcgccactcagcgtgcgggccgggccgggcgattggagccgggggtgtgttatcgg
ttgtggtccgaagaccagcacgaacaactggccgcctatggcagcgcggagattctttcg
gcggacctggccggattggccctgcaactgggacgctggggcgtgacgccgcagcaattg
atctggctcgatgtgccgcccggcgccgcttatgcccaggcccaggacctgctgcaacgc
ctgggggcgctggagggcgagcaattgacccgccacggccaggccatggccgaactgccg
gctcacccacgtatcggccatttattgctgcgtgggcaggcgcttgggctggcagacatg
gcctgtaacgtggcagcgttgttgggcgaacgggacattctcaggggcgccggcgcggat
ttgcacagtcgtctggccttgctgtccggcgaagaacgggcggcgcggggggcacaaggc
ggcgtaacgcgggcgcggcaactggcccggcagtatcgcggttacttgcggggtaaggcc
gaagaagccgtggccgatcccgatcatccgcgttggctcggagcgctgctggcgttggct
tatccggatcgggtcgcgcagcagcgccgacccggcggcgcggaataccgcctggccaac
ggccgtgcggcgctgttcgccgaggctgacagtctgatgaagcagccgtggctggtgatc
gccgatctcggcagccgccagggccagcgggaagagcggatctacctggcaacggatttc
gatccggcgttgttcgattccgtactggccgagcaggtgcacacggtggatcaactggac
tgggacgaacgcgaaggcgtgctgcgggccgagcgccagcgcaaggtcggcgaactggtg
ctcagccgcgaaccgctgaccggcctggatgagtccgctcgtagccaggccatggtgaac
ctggtgcggcgcaaaggtctggaattattgccctggacgccggaactgcggcaatggcag
gcgcgggtggcactcctgcgtcgtctggacctggacgccaagggcgaaagcgaatggccc
gacgtcagcgacgcagcgctgctcggcagtcttgaacattggctgatgccttacctgggc
cgagtctcgcgcctcagccattttgccaacctggacttgtcgagcattgttcacaacctg
ttgccctggcccctgccgcagcggctggacgagcaagcaccccatcacctgagcgtgccc
tcgggttcgtcgatccgcctggactacagcgaacatccgccgatcctggcggtgcgcttg
caggaactcttcggcctggccgacaccccgcgcatcgccgacggacgccaggtggtcaag
ctgcacctgctgtccccggcacgccggccggtgcaggtgacccaggacctggcgaacttc
tggcgcagcacctatgccgaggtgaagaaggatctcaagggcagataccccaagcattac
tggccggatgatccgttggtggcggaggcgacggcgcgggtcaagccgcgtaagtga
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