Pseudomonas mediterranea: E3Z27_25420
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Entry
E3Z27_25420 CDS
T08284
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmed
Pseudomonas mediterranea
Pathway
pmed03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E3Z27_25420 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmed03021
]
E3Z27_25420 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmed03400
]
E3Z27_25420 (rpoC)
Enzymes [BR:
pmed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E3Z27_25420 (rpoC)
Transcription machinery [BR:
pmed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E3Z27_25420 (rpoC)
DNA repair and recombination proteins [BR:
pmed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E3Z27_25420 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
ApbA_C
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
QHA84756
LinkDB
All DBs
Position
complement(5810401..5814600)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGNSVTNTRIVDTTVGRALLFQVVPKGLSFDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGEEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVEAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDPKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGARIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTHVLVENERLAAEDKFVAKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcat
cgtggtgtgatctgcgagaagtgcggcgttgaagttgcactggcaaaagttcgtcgtgag
cgcatggcacacatcgagctggcgtccccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgcgttctctac
ttcgagagctacgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctg
aatgacgagcagtacttcgaagcgctggaagagttcggcgacgatttcgatgcccgcatg
ggtgccgaagctgtccgcgagctgctgcacgctatcgacctggagcacgagattggccgt
ctgcgtgaagaaattccgcaaaccaactccgaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaggccttccagggctccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagacctgcgtccactggttccgctcgatggcggtcgtttc
gcgacttccgacctcaacgatctgtatcgtcgggtgatcaaccgtaacaaccgcttgaag
cgtctgctcgacctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagcggtcgacgcattgctcgacaacggtcgtcgtggccgcgctatcaccggttccaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgcgttgactactcgggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgcctaagaagatggctctggagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgcgaagaagatg
gtcgagcgcgagttgccagaggtctgggacgttctcgccgaagtgattcgcgaacacccg
gtactgctcaaccgtgcaccgacccttcaccgtctgggcatccaggcgtttgaaccagtc
ctgatcgaaggtaaggctatccagctgcacccgctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccagatggccgtgcacgtaccgctgacgctggaagcccagctcgaagcg
cgcgcgttgatgatgtccaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggatctgcaggaagttgaccgtgtgttccgtgccggc
gaagccgcactgcacgccaaggtcaaggttcggatcaacgaaaccgtgaacgatcgtgac
ggcaacagcgtgaccaacacccgtatcgtcgacactaccgttggccgtgcgctgttgttc
caggtggtgccgaagggtctgtccttcgacgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctatcgcgtggtaggtctgaaagagaccgtgatcttc
gccgaccagttgatgtacacaggttttgcctattcgaccatctccggtgtttccatcggc
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtactgctaccgaagaa
gtgaaagagatcgaaagtcagtacgcctccggcctggtcacccagggcgagaagtacaac
aaggttatcgacctctggtccaaggcgaacgatgaagtctccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgtcacggcgaggaagtcgaccaggaatccttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggctccatcatcgagaccccgattaca
gcgaacttccgtgaaggtctgagcgtactccagtacttcatctccacgcacggtgctcgt
aagggtcttgcggataccgcgttgaaaacggcgaactccggttacctgacgcgtcgtctg
gtagacgtggcgcaagacctggtcgtgaccgagatcgactgcggcaccgaacacggcctg
gtcatgactccgcacatcgaaggcggcgacgtggtcgagccgctgggtgagcgcgtattg
ggtcgtgtcatcgcccgtgacgtattcaagccaggtaccgaggacgtcatcgttcctgct
ggcaccctggtagacgagaagtgggtagagttcatcgagctgaacagcatcgatgaagtg
atcgtgcgttcgccgatcagctgcgaaacccgctacggcatttgcgccaagtgctacggc
cgtgacctcgctcgtggtcaccaggtgaacatcggtgaatcggtcggcgttatcgcggcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcggccgacagcgttcaggtgaaaaatggcggtactgtccgcctg
cacaacctgaaacacgttgagcgcgtggacggtcacctggtggctgtatcccgttccggt
gagctggcgatcgcggacgacttcggtcgtgagcgcgagcgttacaagctgccttacggt
gccgtgatttcggtgaaggaaggtgacaaggtcgaagctggcgcaatcgtggccaagtgg
gatccgcacactcacccgatcgtcaccgaaatgaaaggtaccgtgacctacgtaggcatg
gaagaaggcatcacgatcaagcgtcagaccgacgaattgaccggtatgaccaacatcgaa
gtgctcgatccgaaagatcgtccagctgccggcaaggacatccgtccagccgtgaagatg
gtcgacgacaacggcaaggacctgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccctggtcggtgtggcggacggcgcgcggatcgcgatcggtgacgtt
atcgctcgtatcccgcaagaaacttcgaagactcgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagcccgtcgtccgaaggaagcctcgatcctggctgaagtcagc
ggcaccatcgcgttcggtaaggagaccaagggcaagcgccgtctggtcatcactccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtgaacgagatccaggacgtt
taccgtctgcaaggcgtgaaaatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgagatctccgagtccggcgactccagcttcatcaagggcgaccagatg
gaactgacgcacgtactggtagagaacgagcgcctggctgcggaagacaagttcgtcgcc
aagttcacccgcgtcctgctgggtatcaccaaggcgtcgttgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccactcgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtttggcctatcacagcgagcgcaagcgtcgccgtgatgcagacaagccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactcgagtggtaactga
DBGET
integrated database retrieval system
