Pseudomonas mediterranea: E3Z27_26415
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Entry
E3Z27_26415 CDS
T08284
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmed
Pseudomonas mediterranea
Pathway
pmed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3Z27_26415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmed03019
]
E3Z27_26415
Enzymes [BR:
pmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E3Z27_26415
Messenger RNA biogenesis [BR:
pmed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E3Z27_26415
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QHA84933
LinkDB
All DBs
Position
6040747..6042579
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AA seq
610 aa
AA seq
DB search
MSFASLGLSEALVGAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRSLL
AHLITTGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTRQKIPDGDLMGFDASTIEAEKPEVRERPDVRNPRNPRGPRGDGPNGGGGGRK
DKGKDKGKEKPAGSNRGERPAREQKPRESTPAPRAAADRAPDEFLDDDIDNFGNRVDYVP
QQKPAQGRGRRPGAPGQGAGAGAPRGGQPQGRQNGPRNSNGSSTGTPPAKRNGPRNGGPR
DGQARREDARRRPARDDQARQEPAVQNPRGNQPKIMHKESKLDRFPTPEQLDQLPSRPRG
EKPALLTRNR
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgccatcgaagccgcaggc
tacaccgagcctaccccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgat
ctgatggtcgccgcacagacaggtactggtaaaaccggcggtttcgccctcccgatcctg
gagcggctgttccccaacggtcacccggacaaatcccagcgtcacggcccgcggcagccg
cgcgtactggtcctgaccccgacccgggaactggcagcccaggtccacgagagcttcaag
gtctacgcccgcgacctgaaattcgtcagtgcctgcattttcggcggtgtcggcatgaac
ccccaggtccaggccatggcgcgcggcgtcgacgtgctggtggcctgccccggccgcctg
ctggatctggccggccagggcagcgtcgatctgtcccacgttgaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaagaaagtcctcgcccgc
ctgcccgccaagcgtcagaacctgctgttttcggcaacgttctccaaagacatcaccgac
ctggccggtaagctgctgcacaacccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgaacgcatcgaacagcgcgtattccgcctgccggccagccataagcgcagcctgctg
gcgcacctgatcaccaccggcgcctgggaacaggtcctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgaatacctcgacaagcatggcctgcccgccgtggcgatccac
ggcaacaagagccagaacgcccgcaccaaggccttggccgatttcaaggccggcgaagta
cggatcctggttgccaccgacatcgccgcccgcggcctggatatcgaccaactgccccac
gtggtcaacttcgagctgccgaacgtcgatgaagactacgtgcaccgtatcggccgtacc
ggccgggccggtcgttcgggcgaagcgatctcgctggtcgcaccggacgaagaaaagctg
ctcaagagcatcgagcgcatgacccggcagaagattcccgatggcgatctgatgggcttc
gatgccagcaccatcgaggccgagaagcctgaggtgcgcgagcgtccggacgtgcgcaat
ccgcgcaatccacgcggcccacggggtgacggcccgaatggcggcggtggcggccgtaag
gacaagggcaaggacaaaggcaaggaaaaaccggccggcagcaatcgcggcgaacgcccg
gcgcgcgagcaaaagcctcgcgaaagcacgccagcccctcgtgccgcggctgatcgcgct
ccggacgaattcctggacgacgatatcgataacttcggtaaccgcgtcgactacgtgcca
cagcagaaaccggctcagggtcgtggtcgccgtccgggtgctccgggacagggtgctggc
gcaggtgctccacgcggcggccagccacagggtcgccagaacggtccgcgcaacagcaac
ggttcgtccaccggcaccccgcccgccaagcgcaacggcccgcgcaacggcggtcctcgc
gacggtcaggcccgccgcgaagacgcccgccggcgcccggcccgcgatgaccaggcacgc
caggaacccgcggtgcagaaccctcgcggcaaccagccgaaaatcatgcacaaggagtcc
aagctcgatcgtttcccgacgcccgagcagctggaccaactgccaagccgtccacggggt
gaaaaacctgcgttgctgactcgcaatcgctga
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