Pseudomonas mediterranea: E3Z27_27085
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Entry
E3Z27_27085 CDS
T08284
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pmed
Pseudomonas mediterranea
Pathway
pmed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3Z27_27085 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmed03021
]
E3Z27_27085 (rho)
03019 Messenger RNA biogenesis [BR:
pmed03019
]
E3Z27_27085 (rho)
Transcription machinery [BR:
pmed03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
E3Z27_27085 (rho)
Messenger RNA biogenesis [BR:
pmed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
E3Z27_27085 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
QHA85059
LinkDB
All DBs
Position
complement(6180414..6181673)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaag
aagcacgcgaagagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctccgttccgcggacgcttcctacctcgccggcccggacgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcgttacttcgcgctgctcaaggtcgacacgatcaac
ttcgaccgtccggaaaacgcgaagaacaagattcttttcgaaaacctgaccccgctgttc
ccgactgtgcgcatgaagatggaagccggcaacggctccaccgaagacctcaccggtcgt
gtcatcgacctgtgtgcgcccatcggcaaaggccagcgcggtctgatcgtggcgccgccg
aaagcgggcaagacgatcatgctgcagaacatcgcggccaacatcgcccgcaacaaccct
gaagttcatctgatcgtgttgctgatcgacgagcgtccggaagaagtgacggagatgcag
cgtaccgtgcgcggcgaagtagtcgcctcgacgttcgacgagccgccgacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctggactccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtactgaccggtggtgtcgatgcccacgccctggagaaaccgaagcgtttc
ttcggcgccgcgcgcaacatcgaggaaggcggttcgctgaccatcatcgccaccgcactg
gttgaaaccggttcgaagatggacgaagtgatctacgaggaattcaagggcaccggtaac
atggagctgcccctggatcgtcgcattgccgagaagcgcgtgttcccggccatcaacatc
aaccgctccggcactcgccgtgaagagctgctgacggccgatgacgagttgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggacgaagtggctgccatcgagttcctggtc
gacaagttgaagacgaccaagaccaacgatgagttcttcctgtcgatgaagcgcaagtaa
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