Paraburkholderia megapolitana: FNZ07_13685
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Entry
FNZ07_13685 CDS
T06515
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pmeg
Paraburkholderia megapolitana
Brite
KEGG Orthology (KO) [BR:
pmeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmeg03016
]
FNZ07_13685
Enzymes [BR:
pmeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FNZ07_13685
Transfer RNA biogenesis [BR:
pmeg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FNZ07_13685
Prokaryotic type
tRNA splicing ligases
FNZ07_13685
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
QDQ85885
LinkDB
All DBs
Position
2:complement(80949..82148)
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AA seq
399 aa
AA seq
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MELAHGKPVKMWTNGVAVEDEAREQLRRTASMPFIFKHVAVMPDVHLGKGSTIGSVIPTQ
GAIIPAAVGVDIGCGMMAARTSLKASDLPDSLVALRHAIERAVPHGRAPGRRDPGAWGEQ
APQHVDEMWKALAPGFKRIVDKYPKLHKTNNYTHLGTLGTGNHFIEVCLDESDSVWFMLH
SGSRGVGNAIGSLFIELAQADMRQHIATLPDRNLAYLKEGAEHFDDYVEAVDWAQDYASR
NRQVMMAAVIGAAYDVIGKPFTVDEHAVNCHHNYVQKERHFGVDVFVTRKGAVSAQKGQL
GIIPGSMGAKSFIVRGLGNPESFCSCSHGAGRAMSRTEAKRRFTVQDQVASTAHVECRKD
ADVVDEIPLAYKDIDAVMAAQHSLVEVVHTLRQVVCVKG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggaactggcgcacggcaagccagtgaaaatgtggaccaacggtgtcgccgtcgaggac
gaagcgcgcgaacagctgcgccgcaccgcgagcatgccgttcatcttcaaacacgtcgcg
gtgatgccggatgtgcacctcggcaagggttcgactatcggcagcgtgattccgacgcaa
ggtgcgatcattcccgcggccgtcggcgtcgacatcggctgcggaatgatggcggcccgc
acgtcactcaaggcgtcggacctgccagattcgctcgtcgcactgcgacacgcgatcgaa
cgtgctgtgccacatggtcgcgcgccgggacggcgcgatccgggagcgtggggcgagcag
gcccctcagcatgtcgacgaaatgtggaaggcacttgctccgggattcaaacgcatcgtc
gacaagtacccgaagctccacaagacgaacaactacacgcatctgggcacgctcggcacg
ggaaatcacttcatcgaggtgtgtctcgacgagtccgacagcgtctggttcatgctgcac
agcggctcgcgcggggtcggcaacgcgatcggcagcctgttcatcgaactcgcgcaggct
gacatgcgacagcacatcgcgaccctgccggaccgcaatctcgcctacctcaaggaaggc
gccgaacatttcgacgattacgtcgaggccgttgattgggcccaggattacgcgagtcga
aaccggcaggtgatgatggctgctgtaatcggcgcggcctacgacgtgataggcaaaccg
ttcaccgtcgacgagcacgccgtgaattgtcaccacaactatgtgcagaaggaacgtcac
ttcggtgtcgatgtgttcgtgacgcgcaagggcgcggtgtcggcacagaaggggcaactc
ggcatcatcccaggatcgatgggggcgaagagttttattgtgcgggggctcggtaatccg
gagagcttctgttcatgcagtcacggtgccggacgcgcgatgagccggaccgaggcgaag
cggcgcttcacggttcaggatcaggtggcgtcgactgcacatgtggagtgtcgaaaggat
gcggatgtggttgatgaaattccgctggcctacaaggacatcgatgcggtgatggctgcg
cagcacagtctcgtcgaggttgtgcatacgttgcggcaggtggtgtgcgtgaagggctga
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