Paraburkholderia megapolitana: FNZ07_19355
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Entry
FNZ07_19355 CDS
T06515
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmeg
Paraburkholderia megapolitana
Pathway
pmeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNZ07_19355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmeg03019
]
FNZ07_19355
Enzymes [BR:
pmeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FNZ07_19355
Messenger RNA biogenesis [BR:
pmeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FNZ07_19355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QDQ83355
LinkDB
All DBs
Position
2:1324361..1325833
Genome browser
AA seq
490 aa
AA seq
DB search
MSDTAVTPSNATFDQFGLSPDILKAIAEQGYTTPTPIQAQAIPVVLSGRDVMGAAQTGTG
KTASFSLPIIQRLLPLASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTPLRSAV
VFGGVDMNPQSAELRRGVEVLIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQTVYEVP
EGDKTGAVVQLIRERSLKQVLVFCNSKIGASRLARSLEKSGVVATAIHGDRTQNERMQAL
EAFKRGEIEALVATDVAARGLDIVELPTVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRPLDVGHLTVDVPVRHHEERSPRREGRDGRDGRDERPARRRSG
GPSFDRPHGSHRQQPIDDFFLKPYEPSPSAHKSDEAAAADAASAQQQKGATKQPLAALLG
GFGMPRKSSS
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagcagtcacgcccagcaacgcgactttcgaccagttcggtctatcgccc
gacatcctgaaagcgatcgcggagcagggctacacgacacccacgccgatccaggcgcag
gcgattcccgtcgtgctgtccggccgtgacgtgatgggcgccgcccagaccggcaccggc
aagaccgcgagcttctcgctgccgatcatccagcggctgctgccgcttgccagcaccagc
gcctcgccggcgcgacatccggtgcgcgcactgatccttacgccaacccgcgaactcgcc
gaccaggtggcggccaacgtgcaggcgtacgcgaagcacacgccgctgcgcagcgcggtg
gtgtttggcggggtggacatgaacccgcaatccgcggaactgcggcgcggtgtggaagtg
ctgatcgcaacgccgggccggttgctcgatcacgttcagcagaagaccgcgaatctcggt
caggtgcagatgctcgtgctcgacgaagcggaccgcatgctcgacatgggcttcctgccc
gatctgcaacgcatcctgaacctgctgccgaaggagcgccagacgctgctattttccgca
acgttctcgggcgaaatcaagaagctcgcggcgacttatctgcgcaacccgcagaccatc
gaagtcgcgcgcagcaactcgactgcgaccaacgtcacgcagaccgtctatgaagtgccg
gaaggcgacaagaccggcgcggtcgtccaactgatccgcgaacgcagcctgaaacaggtg
ctggtgttctgcaacagcaagatcggcgcgagccggctggcccgttcgctcgaaaagagc
ggcgtggtggcgaccgcgattcacggcgaccggacccagaacgaacggatgcaggcgctc
gaagcattcaagcgcggcgagatcgaagcgctggtggccaccgacgtggccgcgcgcgga
ctcgatatcgtcgagttgccgacggtgatcaacttcgacttgccgttcaacgcggaagat
tatgtgcaccgtatcggccgcacggggcgcgcgggtgcgtcgggggatgcgctgtcgctg
tgcagcccgaacgagcgcaagcaactggccgatatcgagaagctgatcaagcggccgctc
gacgttgggcatctaaccgttgatgtgcctgtgcggcatcacgaagaacgtagcccacga
cgcgaaggtcgcgatggacgtgacgggcgcgatgagcggccggctcgtcggcgctcgggt
ggtccgtcgttcgatcgtccgcatggctcgcaccgtcagcaaccgatcgacgatttcttc
ctcaagccgtacgagccgtcgccgtcggctcacaagtccgacgaagcggcagcggccgat
gcggcgtcggcgcagcagcagaagggcgcgaccaagcagccgctcgcggcactgctcggc
ggttttggtatgccgcgtaagtcgtcttcttaa
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