Paraburkholderia megapolitana: FNZ07_22305
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Entry
FNZ07_22305 CDS
T06515
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pmeg
Paraburkholderia megapolitana
Brite
KEGG Orthology (KO) [BR:
pmeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmeg03009
]
FNZ07_22305 (rlmD)
Enzymes [BR:
pmeg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FNZ07_22305 (rlmD)
Ribosome biogenesis [BR:
pmeg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FNZ07_22305 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_23
Methyltransf_11
Methyltrans_SAM
TRAM
Methyltr_RsmB-F
MTS
Methyltransf_15
N6_N4_Mtase
PCMT
Motif
Other DBs
NCBI-ProteinID:
QDQ86003
LinkDB
All DBs
Position
2:1978560..1979957
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AA seq
465 aa
AA seq
DB search
MRKGKRKPAQAAPAADVAQVAAPILEIDSLDMEARGVGRTVTEDGTPGKVIFVEGALPGE
RVTYASYRKKPSFEQAEVVEVLRESVIRTKPKCRFFGTCGGCSMQHLDVRAQIAVKQRVL
EDNLAHLAKLRAETIFRPIHGPSWGYRYRARLTVRNVEKKGGVLVGFHERKSSYVADMTS
CEVLPPHVSAMLVPLRQLVGSLSIRDRMPQIELAVGASVTALVLRVLEPINAADEQHLRD
FADEYKVQFWLQPQGPDSVVPFYPLDVPLDYTLPEFDIRMPFRPTDFTQVNHQINRVLVG
RALRLLAPARNDRVLDLFCGIGNFTLPLARLAREVVGIEGSEVLTTRALENTQENGVAGH
TSFACRNLFEVTADDIRALGAFDKYLIDPPREGALAIAKALAEIAQSGTGPLPQRIVYVS
CNPATLARDAGLLVHEAGYRLKGAGVVNMFPHTSHVESIALFERD
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaggcaaaagaaagcctgcgcaggcggcccccgctgccgacgtcgcccaagtc
gcggcccccattctggaaatcgattcgctcgatatggaagcgcgcggcgtcggccgcacg
gtcaccgaagacggtacgcccggcaaggtgatcttcgtcgaaggcgcgttgccaggcgaa
cgcgttacctatgcgagctaccggaagaaaccgagtttcgaacaggcggaagtcgtcgag
gtactgcgcgaaagcgtgattcgcacgaaaccgaagtgcaggttcttcggcacttgcggc
ggttgctcgatgcaacacctcgatgtgcgcgcgcagatcgccgtgaagcagcgcgtgctc
gaagacaaccttgcgcatctggcgaagctgcgggcggagaccatcttccggccgattcat
ggaccgtcgtggggctaccgttatcgtgcgcggctcaccgtgcgcaacgttgagaagaag
ggcggcgtgctggtcggattccatgaacgcaagagcagctacgtcgccgacatgacgagc
tgcgaagtattgccgccgcacgtttcggcgatgctcgtgccgctgcgccagctggtcgga
tcgctgtcgattcgcgaccgcatgccgcagatcgaactcgcggtcggcgcatccgtgacc
gcgctcgtgctgcgtgtgctcgagccgatcaatgccgccgacgaacagcatctgcgcgat
ttcgccgacgaatacaaggtacagttctggctccagccgcaaggaccggactcggtggtg
ccgttctatccgctcgatgttccgctcgattacacgctgccggaattcgatatccggatg
ccgttccggcccaccgacttcacccaggtcaatcaccagatcaaccgcgtgctggtaggg
cgtgcgctgcgattgctcgcaccggcgcggaacgatcgcgtgctcgatctgttttgcggg
atcggcaacttcacgctgccgctcgcgcggctggcgcgtgaggtggtgggtatagaaggc
agcgaggtgctcactacgcgtgcgctcgaaaacacgcaggagaacggcgtggcggggcat
acgtcgtttgcgtgccgcaacctgttcgaagtcaccgccgacgacatccgcgcgctcggt
gcattcgacaagtacctgatcgatccgcctcgcgaaggcgcattggccatcgcgaaggcg
ctggcggagatcgcgcagagcggcaccgggccgctgccgcaacgcatcgtctacgtgtcg
tgcaaccccgcaacgctggcccgcgatgccggcctgctggttcacgaagcgggttaccgg
ctcaagggggcgggcgtggtgaacatgttcccgcatacgtcgcacgtcgaatcgattgcg
ttgttcgagcgcgattag
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