Paraburkholderia megapolitana: FNZ07_24390
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Entry
FNZ07_24390 CDS
T06515
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pmeg
Paraburkholderia megapolitana
Brite
KEGG Orthology (KO) [BR:
pmeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmeg03016
]
FNZ07_24390
Enzymes [BR:
pmeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
FNZ07_24390
Transfer RNA biogenesis [BR:
pmeg03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
FNZ07_24390
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
2_5_RNA_ligase2
LigT_PEase
DUF5337
Motif
Other DBs
NCBI-ProteinID:
QDQ84249
LinkDB
All DBs
Position
2:complement(2501460..2502071)
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AA seq
203 aa
AA seq
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MATQLLLDGFENLPGPTDRLFFAIRPDDEATAHIERLVARLRIASGLTNKPIARERLHIT
LFWLGDHFGLPQKIVDLLHLAAAQVGTGAAPFDVELDRVEYFGRRADNKPLVLRAAPGAP
GIAALGAFRESLGAAIGFSEAKRRTASFTPHVTLLYDTPPVARQIVHRIGWPVREFFLVH
SLLGQSRHEVLGRWTLGGELPVR
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
gtggcgacacagcttttgctggacggattcgagaatctgcctgggccgacagaccggctc
ttcttcgcgatccgtcccgacgatgaagctactgcccatatcgagcggctggtggcgcgc
ctgcggatcgcatcggggctgacgaacaagccgatcgcccgcgagcggctgcatatcacg
ctgttctggctcggcgaccacttcgggttgccgcaaaaaatcgtcgatctgttgcatctc
gctgccgcgcaggttggcacaggcgcagccccattcgatgtcgagttggatcgtgtggag
tattttgggcgccgggcggacaacaagccgctggtgttgcgcgccgcgcctggtgcaccc
ggcattgcggcgctcggtgcgtttcgcgaatcgttgggggcggcgatcggattcagcgaa
gcgaaaagacgtacagcgagtttcacgccacatgtcacgctgctttacgacacaccgccg
gtggcgcggcaaatcgtgcacaggatcggctggccagtgcgcgagttttttcttgtccat
agcctgcttgggcagtcgcggcacgaggtgctggggcgatggacgctcggcggcgaactt
cctgtgcgttag
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