Paraburkholderia megapolitana: FNZ07_25625
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Entry
FNZ07_25625 CDS
T06515
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pmeg
Paraburkholderia megapolitana
Brite
KEGG Orthology (KO) [BR:
pmeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmeg03019
]
FNZ07_25625 (hrpA)
Enzymes [BR:
pmeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FNZ07_25625 (hrpA)
Messenger RNA biogenesis [BR:
pmeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FNZ07_25625 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
NACHT
T2SSE
nSTAND3
nSTAND_NTPase5
AAA_23
acVLRF1
Motif
Other DBs
NCBI-ProteinID:
QDQ84474
LinkDB
All DBs
Position
2:complement(2774299..2778483)
Genome browser
AA seq
1394 aa
AA seq
DB search
MSNVSKSPASPDAKNASGAGQDKPAQPRPDTAPARRPQQHAPKPPRRGPSGAPGASGQPA
ESGKSAGSNNRPAPRAPRIVEPNPIPPITFPEALPVSGRRDEIARAIAGNQVVIVSGETG
SGKTTQLPKICLTLGRGLGAGGSGLIGHTQPRRIAASATGRRIAEELGTPFGEVVGYKVR
FTDNLAPGASVKLMTDGILLAETQTDPLLRAYDTLIIDEAHERSLNIDFLLGYLKEILPK
RPDLKLIVTSATIDADRFARHFGSEERPAPVIEVSGRLYPVEVRYRPVAEDSPAVKAAEG
TAGRERARSGAGRDRDLMEAIVDAVDELCREGPGDVLVFLPGEREIRDAAEALRKHHPPH
TEILPLFARLSAAEQERVFRTSNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYR
NKVEQLQVESISQAAANQRAGRCGRVADGICIRLYEESDFQGRVRFTDPEILRSSLAAVI
LRMKSLHLTGIETFPFIEPPPGRAIADGYQLLNELGAVDDDNALTPLGRELGRLPLDPRV
GRMILAARDQQALREVLIIASALSVQDPRDRPIEAQEQADQAHRRFADERSEFLQWLKIW
AWFEEAIEHKKSNRQLADACRANFLSHLRLREWRDVHSQLLTVVREHGWRLNETEATFEQ
IHLALLTGLLGNIGLKADDEPHYLGARGIKFFLWPGSALVKKAGRWVIAAELVETSRLYA
RCIAKIEPEWIERVGAHLLRKSLSEPHWEKRAAQVSAFERAVLYGLTVYHRRRVSFGKQD
PARARELFIRGALVEGEFDTKLAFFAHNRKLFADIEQLEHKSRRQDVLVDDELIFGFYDQ
AIPQGMHTGAAFERWYRDEVKKSGQPEDRLRLLYLSRDDLMRHEAAGVTTDLFPKRMTMS
GVEMTLSYHFEPGTPRDGVTLALPLYALNQVDARRCEWLVPGMVKEKTQLLLKSLPQKLR
RHCVPLPEYAAGFVERTGGPRFGAGGLLETLIADIREQTQVAVRQADFKLETLAAHLFMN
FKVVDEHGRQLAMGRNLAQLRAELGGQAQQHFQQIAAGAAGAALADVAGGGASVAASTRG
AAAGAVPATRGKPASAAPQTGRQEGTASGTALYENLTTWSFGKLPELLEIRRGGQTLFGY
PALVDRGTHCDVEVFDSPDEAARIHRAGLRRLFALQLREPIRYLEKNLPGLREMAMQFMP
RGSQEELRDQLIDVALDRACLQEPLPDDDASFHARHDEGKGRLTLLAQEIARLVGLILGD
YAAAAKKLVQAKSFGAAYADLNSQLDTLIGKRFVIDTPYQQLTHFPRYLKGIALRIDKLK
ADSARDARQAAEFQPLLQHYQRALAQRGGVADPRLAEFRWLLEELRISLFAQELRTPMPV
SVKRLVKVWESMQR
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtatccaaaagtcccgcttcgccggatgcgaaaaatgcgtcgggtgccggg
caagacaagccggcgcagccccgccccgacacggcgcccgcgcggcgcccgcagcagcac
gcgccgaagccgccgcgccgtgggccatctggagcgccgggagcgtctggccagcctgct
gagtctggtaaatccgccggcagcaacaaccgtcccgctccgcgcgcgccgcgcatcgtc
gagccgaacccgatcccaccgatcaccttccccgaagcgctgccggtctccggtcgacgc
gacgaaatcgcgcgtgcgattgccgggaatcaggtcgtgatcgtcagtggcgagaccggt
tcgggcaagacgacccagctaccgaagatctgtctcacgctcggccgtggccttggcgcc
ggcggctccggtctgatcgggcacacgcagccgcggcgtatcgcggcctccgcgaccggt
cgccggatcgccgaggaactcggcacgccgtttggcgaagtggtcggctacaaggtgcgt
ttcaccgacaatctcgcgccgggcgcgtcggtcaagctgatgaccgacggtatcctgctg
gccgagacgcaaaccgatccgctgctgcgcgcctacgacacgctgatcatcgacgaagcg
cacgagcgcagcctgaacatcgattttctgctcggctatctgaaggaaatcctgccgaag
cggcccgatctgaagctgatcgtcacgtccgcgacgatcgacgcggaccgttttgcgcgg
cacttcggcagcgaggagcggccggcgccggtgatcgaagtgagcggccggctctatccg
gtcgaggtgcgctaccggccggtcgccgaagacagccccgcggtgaaggctgccgaaggc
acggccggccgcgagcgggcacgcagcggggcgggccgcgaccgcgatctgatggaagcg
atcgtcgatgcggtcgacgaactgtgccgcgaaggcccgggcgacgtgctcgtgttcctg
cccggcgagcgcgagattcgcgacgccgcggaagcgttgcgcaagcatcatccgccgcat
acggaaattctgccgctgttcgcgcggttgtcggcggcggagcaggaacgcgtgttccgc
acctcgaacgcgcggcgtatcgtgctcgcgaccaacgtcgccgaaacctcgctgacggtg
ccgggcatccgctacgtggtcgatacggggctggcgcgcgtcaagcgctattcgtaccgc
aacaaggtcgagcagttgcaggtcgagtcgatctcgcaggctgcggccaaccagcgcgca
ggccgctgcggccgcgtggccgacggcatctgtatccgtctttacgaagagagcgatttc
caggggcgggtgcgcttcaccgatccggaaatcctgcgctcgtcgctggcagcggtgatt
ctgcggatgaagtcgctgcatctgactggaatcgaaaccttcccgtttatcgagccaccg
ccgggccgggcgatcgccgatggttaccaactgctgaacgaactcggtgccgtcgacgac
gacaacgcgctgacgccgctcggtcgcgagctggggcgcttgccgctcgatccgcgggtc
ggccggatgatcctcgccgcgcgcgaccagcaggcgttgcgcgaggtgttgatcatcgcg
agtgcgctgtcggtgcaggacccgcgcgaccggccgatcgaagcgcaggagcaggccgat
caggcgcatcggcgcttcgccgacgagcgttcggaattcctgcagtggctgaaaatctgg
gcgtggttcgaagaagcgatcgagcacaagaagtcgaaccggcagcttgctgacgcgtgc
cgggcgaatttcctgtcgcatctgcgtttgcgcgaatggcgcgatgtgcactcgcaactg
ctgacggtggtgcgcgaacacggctggcgtctgaacgaaaccgaagcgaccttcgagcag
atccatctcgcgctgctcacgggcctgctcggcaacatcggcctgaaagccgacgacgaa
ccgcactacctcggcgcgcgcggcatcaagttcttcctctggccgggttcggcgctggtg
aagaaagccgggcgctgggtgatcgcggccgaactcgtcgagacgagccggctgtacgca
cgctgcatcgcgaagatcgagccggagtggattgagcgggtcggcgcgcatctattgagg
aaatcgctctccgagccgcactgggaaaagcgcgcagcccaggtgtcggcgttcgagcgg
gcggtgctgtatggcctgacggtgtatcaccggcggcgtgtgagcttcggcaaacaggac
ccggcgcgggcgcgcgagctgtttatccgcggcgcgctggtcgaaggcgaattcgacacg
aagcttgcgttctttgcgcacaaccgcaagctgttcgccgatatcgagcagctcgaacac
aagtcgcgtcgccaggacgtgctggtcgacgacgaactgatcttcggcttctacgatcag
gcgattccgcagggcatgcataccggtgccgcgtttgagcgctggtatcgcgacgaagta
aagaagagcgggcagccggaagatcgcttgcggctgctgtatctgtcgcgcgacgacctg
atgcggcacgaagccgccggcgtcaccaccgatctgttcccgaagcggatgacgatgtcg
ggcgtcgagatgacgctgtcgtatcacttcgagccgggcacaccgcgcgatggtgtaacg
ctcgcgttgccgctgtatgcgctgaaccaggtcgatgcgcggcgctgcgagtggctcgtg
ccgggcatggtcaaggaaaagacccagttgctgctgaagtcgctgccgcagaagctgcgc
cgtcattgcgtgccgctgccggaatacgcggcgggttttgtcgagcgcaccggcggtccg
cgttttggcgcgggcggtctgctcgaaacgttgatcgcagatattcgcgaacagacgcag
gtcgccgtccggcaagcggatttcaagctcgaaacgctggcggcgcacctgttcatgaat
ttcaaggtcgtcgacgagcacggacgacagcttgcgatggggcgcaatcttgcgcagttg
cgcgctgaactcggtggtcaggcgcagcagcattttcagcagattgcggcgggggctgcg
ggggcggcgcttgccgatgtggcgggtggtggtgccagtgttgctgcgagtacgcgcggt
gccgcagccggagcggtaccggcgacgcgtggcaaacccgcgtccgcggcgccgcaaacc
gggcgacaagaaggcacggcctctggcacggcgctctacgaaaacctcaccacatggagt
ttcggcaagctgcccgaactgctcgaaattcgtcgcggtgggcagacgctgttcggctat
ccggcgcttgtcgatcgcggcacgcattgtgacgtcgaggtattcgattcgcccgatgaa
gccgcgcgcattcatcgcgcgggtctgcggcggctctttgcgctgcagttgcgcgaaccg
atccgctacctggagaagaacctgccgggattgcgcgagatggcgatgcagttcatgccg
cgcggttcccaggaagaattgcgcgatcaactgatcgatgtcgcgctcgatcgagcgtgc
ctgcaagagccgctacccgacgacgacgcgagttttcacgcgcgccacgacgaaggcaaa
gggcgcctcacgttgctcgctcaggagattgcacggctggtcggactgattctcggcgac
tacgcggcggccgcgaagaaactcgtgcaggcgaagtcgtttggcgcggcgtacgcggat
ctcaacagccagctcgatacgctgatcggcaagcgctttgtcatcgatacgccgtatcag
cagctcacgcattttccgcgctatctgaagggcatcgcgctgcgcatcgacaagctgaaa
gccgattcggcgcgcgacgcgcggcaagcggcggaattccagccgctgttgcagcactat
cagcgcgcgctcgcgcagcgcggcggtgtcgccgatccgcgtcttgcggagtttcgctgg
ttgctcgaagaactgcgcatttcgctgttcgcgcaggaactgcgtacgccgatgccggta
tcggtgaagcggctcgtcaaggtgtgggaatcgatgcagcgttga
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