Paraburkholderia megapolitana: FNZ07_30625
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Entry
FNZ07_30625 CDS
T06515
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pmeg
Paraburkholderia megapolitana
Brite
KEGG Orthology (KO) [BR:
pmeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmeg03016
]
FNZ07_30625
Enzymes [BR:
pmeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FNZ07_30625
Transfer RNA biogenesis [BR:
pmeg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FNZ07_30625
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QDQ85371
LinkDB
All DBs
Position
2:complement(3878164..3880281)
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AA seq
705 aa
AA seq
DB search
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRTKVRSKDVLIEFEKPAAAELMERADAT
AQGIDLEFLWECAPEDEFPFATLGAEYFGTSFGPVERAALVLRMHGSPVYFRRKGRGQYQ
RAPEEQLKMALASLERKRQQALVQAGYEDELKAGRLPDAFAGKALGLLTKPDKNTIEYKA
LEAAAAVRGISMPRLMLECGGISSPRALHEARFLSEFFPHGTGFAPVTVRALPDDLPEAN
VEAFSIDDVTTTEIDDAFSVEHLGDGRVRIGVHIAAPALGIERGDAVDAIARTRLSTVYM
PGDKITMLPDDVVNVFTLAEGGLRPALSLYVIVNRETQEIVASETRAELVFVKSNLRHNT
LDELVTEEALAAGTGEYAHKDDIAVLWPFAQALFEKRQVARAGYGLRREVQRNTDFNFYV
DGEHITITPRRRGSPLDTIVAELAILANSTWGAFLHDHGVPGIYRTQRAFGAPSGPKRTR
MQTSAAPHEGLGVSQYAWSTSPLRRYVDLVNQWQLIACVQHGVMAKLAAPFKPKDADLYA
VVQGFDDTYSAYADYQRRMEYFWCLRWLHQENRKHVEASVVKGDLVRLDEIPLLLHVPGL
GVHARGTRLLLDVMSLDELTVEASVRLLQVLDAPTVASGAEVEEAEETDEEDEESGKDLV
DAADESAESEAEAEADGTEEAEDNAAPQETDENASADHSAAEPGR
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttcttcgaggaatcgggtagtttcaaggcaggcagtgtgctgtcgcgtcag
ggcgatgcgtttcaggtcgagttgcccggcggacggcgtaccaaggtgcgctcgaaagac
gtgctgatcgaattcgagaagccggctgccgccgaattgatggagcgtgccgacgcgact
gcgcaggggatcgatctcgaattcctgtgggaatgcgcgccggaagacgagtttccgttt
gccacgctgggcgccgaatatttcggcacgtcgtttgggcccgtggagcgcgccgcgctc
gtgctgcgcatgcacggctcgccggtttacttccggcgcaaaggacgcggccagtatcaa
cgtgcgcccgaagaacaactgaagatggcgctcgcctcgctcgagcgcaagcgtcaacag
gcgctcgtgcaggccggctacgaagacgagctgaaggccggacgtcttcccgatgcgttc
gccggcaaggcgctcggtctgctgacaaagcccgacaagaacacgatcgaatacaaggcg
ctcgaagcggccgctgccgtgcgtggcatttcgatgccgcgtctgatgctcgaatgcggc
ggcatctcgtcgccgcgcgcgctgcacgaggcgcgcttcctgtccgagttcttcccgcac
ggcaccggctttgcgcccgtgacagtgcgcgcgttgcccgacgacctgccggaagccaac
gtagaggcgttttcgatcgatgatgtgacgacgaccgaaatcgacgatgcgttctccgtc
gagcatctcggcgacggtcgcgtgcggatcggcgtgcacatcgcggcaccggcactcggt
atcgagcgcggcgatgccgtcgatgcgatcgcgcgtacgcggctctccactgtgtacatg
cccggcgacaagatcacgatgctccccgacgacgtcgtcaacgtgttcacgcttgccgaa
ggcggcttgcgcccggcgctgtcgctgtacgtgatcgtgaatcgcgaaacgcaggagatc
gtcgccagcgagacgcgcgccgaactcgtgttcgtgaagagcaacctgcggcacaacacg
ctcgacgaactcgtgaccgaagaagcgctcgcagccggtacgggcgaatacgcgcacaag
gacgacatcgcggtgctctggccgttcgcgcaggcgctgttcgaaaagcgccaggtcgcg
cgcgcgggctatggcctgcggcgcgaagtgcagcgcaataccgacttcaatttctatgtc
gatggcgagcacatcaccatcacgccgcgccgccgcggctcgccgctcgacacgatcgtc
gccgaactcgccatcctcgcgaattcgacgtggggtgcgttcctgcacgatcacggtgtg
ccgggtatctatcgcacgcagcgcgcgttcggcgcaccgagcggcccgaagcggacgcgc
atgcagacgagcgccgcgccgcacgaagggcttggcgtatcgcagtacgcgtggagcacg
tcgccgttgcgccgttacgtggatctggtcaatcagtggcaattgatcgcgtgcgtgcag
catggcgtgatggcgaagctcgctgcgccgttcaagcccaaggacgccgatctgtacgcc
gtcgtccagggcttcgacgacacgtattccgcgtatgccgactaccagcgccgcatggag
tacttctggtgcctgcgctggctgcaccaggaaaatcgcaagcacgtggaggcatcggtt
gtgaagggcgacctcgtgcggctcgacgaaatcccgctgctgctgcatgtgcctgggctc
ggcgtgcatgcgcgtgggacgcgtctgctgctcgacgtgatgtcgctcgacgagttgacg
gttgaggcatcggtgcggctgttgcaggtgctcgatgcgccgactgtcgcgagcggtgcg
gaggtggaagaagcggaagagactgacgaagaagacgaagaaagcggcaaggacctcgtc
gacgcggcggatgaatcggcggaaagcgaagctgaggcggaagcagacggtacggaagaa
gccgaagacaacgccgcaccgcaggaaaccgacgagaacgcctccgccgatcattccgcc
gcggagcccggacgatga
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