Paracoccus methylovorus: JWJ88_03975
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Entry
JWJ88_03975 CDS
T08684
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pmeh
Paracoccus methylovorus
Brite
KEGG Orthology (KO) [BR:
pmeh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmeh03016
]
JWJ88_03975 (rnd)
Enzymes [BR:
pmeh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JWJ88_03975 (rnd)
Transfer RNA biogenesis [BR:
pmeh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JWJ88_03975 (rnd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QRZ14132
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All DBs
Position
1:783502..784674
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AA seq
390 aa
AA seq
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MRTLTTTDELAEFCALAKTQPYVTLDTEFLRERTYYSRLCLIQAALPSASGAKAAGGTAV
LIDPMVEGLSLEPLYDLFRHQATVKVFHAARQDLEIFFHDAGVMPDPLFDTQIAAMVCGF
GEQVGYETLVKKIARQPLDKSSRFTDWSHRPLSDAQAAYALADVTHLRAIYEFLSTQLEK
TGRAPWVAEEVAVLLNPETYITRPEEAWERVRTRSGSPRFLAVVRELARFRETYAQDRDI
PRARVFKDDALIELASTKPLTEGDLAKSRLLLRDARRGEIANGILAAVKAGVDARELPKP
APEEPGRPGNAALAELLRVLLKAKADSAGVAPRLIASAADLDAIASGARDVPALSGWRAE
VFGHDALRLAAGEIALSAQGGVVKVVPVPV
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atccgcacccttaccaccacggatgaactggccgagttctgcgccctcgcaaaaacccag
ccctatgtcacactcgacaccgaattcctgcgcgaacggacttattattccaggctgtgc
ctgattcaggccgcgctgccttcagcctcgggggcgaaagcggcgggcggcactgcggtg
ctgatcgaccctatggtcgaagggctgtcgcttgagccgctttacgaccttttccgtcac
caagcgacggtcaaggtgttccacgccgcccggcaggatctggagatcttctttcacgat
gcgggcgtcatgcccgacccgctgttcgacacgcaaatcgccgccatggtctgcggcttt
ggcgagcaggtgggctatgagacactggtcaagaagatcgcccgccagccgctggacaag
tcctcgcgctttaccgattggtcgcatcggccgctttcggatgcgcaggccgcctatgcg
ctggccgacgtgacgcatctgcgcgcgatttacgaattcctgtcgacccagttggaaaag
accggccgcgcgccttgggtcgccgaagaggtcgcggttctgctgaaccccgaaacctat
atcacccggcccgaagaggcgtgggagcgggtgcgcacccgctccggttcgccgcgcttt
ctggccgtggtgcgcgaactcgcccgctttcgcgaaacctatgcccaggatcgcgacatt
ccccgcgcccgggtgttcaaggatgacgcgctgatcgagcttgcctcgaccaagccgctg
accgaaggcgatctggccaagtcccgcttgcttttgcgtgacgcccgccggggcgagatc
gccaatggcatccttgctgcggtcaaggccggggtcgatgcgcgcgaactgcccaagccc
gcccccgaagaaccgggccgacccggcaacgcagcgttggccgagcttttgcgcgtgctg
ttgaaggccaaggccgattcggctggggtggcgccgcggctgatcgcctcggccgccgat
cttgacgccatcgcctcgggcgcacgggatgtgcctgcgctttcgggctggcgggccgag
gttttcggccatgacgcattgcggctggcggcgggcgagattgccttgtccgcgcagggt
ggggtggtcaaggtcgtgccggttccggtctga
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