Paracoccus methylovorus: JWJ88_14345
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Entry
JWJ88_14345 CDS
T08684
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmeh
Paracoccus methylovorus
Pathway
pmeh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JWJ88_14345 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmeh03400
]
JWJ88_14345 (mfd)
Enzymes [BR:
pmeh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JWJ88_14345 (mfd)
DNA repair and recombination proteins [BR:
pmeh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JWJ88_14345 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
MFD_D3
AAA_16
RecG_dom3_C
AAA_22
SecA_DEAD
Phage_tail_APC
UB2H
Motif
Other DBs
NCBI-ProteinID:
QRZ15523
LinkDB
All DBs
Position
2:245060..248524
Genome browser
AA seq
1154 aa
AA seq
DB search
MSSHPEHLILSGAPEGMDAALIARELSRGKPVIHIARDDRRMAAMRAALEFFAPAVAVLE
FPAWDTTPYDRVSPAPAVMAARMAVLTALAHGAFKGPFVLLTTLSAVMQRVPAREVLRDA
SFSAAVGDRMDDAGLRAFLARMGFVQAPTVTEPGDFAVRGGIIDIFPPGESGPIRLDMFG
DVLDGARRFDAETQRSTEKLDRIELAPMSEVILDEAAITRFRQNYRAEYGGGANDPLYEG
ISAGRKIAGMEHWLPWFHARLESLFDYLPDASVVTDDHLEQVRDARWHTITEQFDARREA
LARKGGTDSVYRPVPPNMMFPDESEWTRWLAVHRVLRLSVLPQPPGPGVLDAGGRVGRNF
APERQAEKGNIFKALADHLRSTLASRRVVIASFSEGARERLAGLILDEGIKGAKPIADLR
DLPDQAGALGLAVWPLEGGFTSDGSATGALAVISEQDVLGDRLIRGAKKRRKAENFLRDT
TTLTPGDLVVHVEHGIGRYTGLETVKALGVPHDCVALEYAGGDRLYLPVENIELLSRYGH
EQGLLDKLGGGAWQARKARLKERIKLIADRLMRVAAERLLRPAPVLEPEHHEIETFAARF
PYAETDDQAAAIADVAEDLAAGRPMDRLVVGDVGFGKTEVAMRAAFIAASQGRQVAVVAP
TTLLARQHFRTFAERFRGTAINVRPLSRFVSAKDASATRKGLAEGTVDIVVGTHAVLSKQ
VRFKNLGLLVVDEEQHFGVAHKERLKELRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG
TPPIDRLAIRTYVSEFDSVTIREALVREKYRGGQSFFVVPRLTDLPEVEEWLKEHVPEVS
YIVAHGQLAAGDLDRRMNGFYDRGADVLVATSIVESGLDIPTANTMVVWRADMFGLAQLY
QIRGRVGRSKTRAYCYLTTKPRVPLTPQAMRRLKFLGALDSLGAGFNLASQDLDLRGAGN
LLGEEQSGHIKEVGFELYQQMLEETIAKLKSGEIEGTPEDEWAPQLNLGVPVTIPESYVP
DLDVRLGLYRRLAGLTSKVELEGFAAELIDRFGPLPREVNTLLLVIRIKAMAKRANIAKL
DAGPKGATIQFHGDKFPNPAGLVEFIHDQRGQAKVTDNRIVILRDWPTDADRIKGSFAIA
KDLAAKIKEGKAKG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctcatccagaacacctgatcctctccggcgcgcccgaaggcatggatgccgcg
ctgatcgcgcgcgaactgtcacgcggcaaacccgtcatccatatcgcccgcgacgaccgg
cgcatggccgcgatgcgggctgcgctggagttctttgcccctgctgtcgcggtgctggag
ttcccggcctgggatacgacgccctatgatcgcgtctcacctgcgccggcggtgatggcg
gcccggatggcggtgctgacggcgctggcacatggtgcgttcaaggggccgttcgtgttg
ctgacgacgctttcggccgtcatgcagcgcgttcccgcgcgcgaggtgctgcgcgatgcc
agtttctcggctgccgtgggcgaccggatggatgatgcgggtttgcgcgcctttctcgcc
agaatgggtttcgtgcaggcgcccacagtgaccgagccgggcgatttcgcggtcaggggt
gggatcatcgatatcttcccgcccggtgaatctggcccgatccggttggatatgtttggc
gacgtgctggatggcgcgcgcagattcgacgcagaaacacagcgttccaccgaaaagctc
gaccgtatcgagcttgcgcccatgtccgaagtgatcctggacgaagctgcgatcacccgt
ttccgccagaactaccgtgcggaatatggcggcggtgccaacgatccgctttatgagggg
atcagcgcaggccgcaagatagcggggatggagcactggctgccgtggtttcatgcgcgg
ctggaaagcctgttcgattatctgcccgatgcctcggtcgtcaccgacgatcatctggag
caggtgcgcgatgcgcgctggcacacgatcaccgaacagtttgatgcccggcgcgaggcg
ctggcgcgcaagggcggcaccgattccgtctatcgtccggtgccccccaacatgatgttc
ccggacgaatccgaatggacgcgctggctggccgtgcatcgggtgctgcggctgtcggtc
ctgccccagccccccgggccgggagttctggacgcgggcgggcgggtcgggcgtaatttc
gcccccgaacggcaggcagagaaaggaaatattttcaaagcccttgccgatcatcttcga
agtactctggcttcccgccgggtggtgatcgccagcttctcggaaggcgcgcgcgagcgg
cttgccgggctgatcttggatgaaggcatcaagggcgccaaacccatcgccgatcttcgc
gacctgcccgatcaggccggcgcgctggggctggcggtgtggccgctggaaggaggcttt
acctcggacggttcggcgacgggtgcgctggcggtgatctcggaacaggacgtgctgggc
gaccggctgatccggggcgcgaaaaagcgtcgcaaggccgagaatttcctgcgtgacacc
accacgctgacccctggtgatctggtggtgcatgtcgagcatggcatcggccgctatacc
gggctggaaaccgtcaaggcgcttggcgtgccgcatgattgcgtggcgctggaatatgcc
ggcggcgaccggctgtacctgccggtcgaaaatatcgagttgctgagccgctatggccac
gaacagggtctgctcgacaagctgggtggcggtgcatggcaggcgcgcaaggcccgcctg
aaagaacggatcaagctgattgccgaccggctgatgcgggtcgcggccgaacggctgctg
cgcccggccccggtccttgagcccgagcatcacgagatcgaaacgttcgccgctcgattc
ccctatgcggaaaccgacgatcaggctgctgccatcgccgatgtggccgaggatctggcc
gcaggccgcccgatggaccggctggtcgtgggcgacgtgggtttcggcaagaccgaggtc
gccatgcgcgcagcctttattgccgcctcgcagggccgtcaggtcgccgtggtggcgccg
acgacactgctggcccgccagcatttccgcacctttgccgagcgtttccgcggcacggcg
atcaatgtccggccgctgtcgcgcttcgtatccgccaaggatgcctctgcgacccgcaag
ggtctggcggagggcaccgtggatattgtcgtcggcacccatgcggttctgtccaagcag
gtgcgcttcaagaaccttgggctgctggtggtggacgaagagcagcatttcggcgttgcc
cacaaggagcggctgaaggaattgcgcagcgacatccacgtcctgacgctgaccgcgact
ccgattccgcgcacgttgcaactgtcgctgacgggggttcgcgatctgtcgatcatcggc
acgccgccgatcgaccggctggcgatccgcacctatgtcagcgaattcgacagcgtcacc
atccgcgaggcgctggtgcgcgagaaatatcgcggcgggcagagtttcttcgtcgtgccg
cgcctgaccgatctgcccgaggtcgaggaatggctgaaagagcatgtgccggaggtcagc
tatattgtcgcccatggtcagcttgcggcgggcgatctcgaccgccggatgaacggcttt
tacgaccggggcgcggatgtgctggtggcgacgagcatcgtcgaatcagggctggatatc
ccgaccgcgaacaccatggtggtctggcgcgccgatatgttcggcctggcgcagctttac
cagatccgcggcagggtcgggcgttcaaaaacccgggcctattgctatctgaccaccaag
ccgcgcgtgcccctgacgccgcaggccatgcggcggctgaagttcctgggggcgctcgac
agtttgggcgcgggctttaacctcgcctcgcaggatctggatctgaggggggcggggaac
cttctgggcgaagagcaatccggccatatcaaggaggtcggcttcgagctttaccaacag
atgctggaagagacgattgccaagctgaagtcgggcgagatcgagggcacgcccgaggac
gaatgggcgccgcagttgaatctgggtgtgccggtgacgatcccggaaagctatgtgccg
gatctggatgtgcggctgggcctttatcgccggctggccgggctgaccagcaaggtcgag
ctggaggggttcgccgccgagttgatcgaccgtttcggtccgctgccccgcgaggtgaac
acgctgttgctggtcatccgcatcaaggccatggccaagcgcgcgaatatcgccaagctg
gatgccgggccgaagggggcaacgatccagttccatggcgacaagttccccaatcccgcc
gggttggtcgaattcatccacgatcagcggggccaggccaaggtaaccgacaaccggatc
gtcatcttgcgtgactggccgaccgatgccgatcgtatcaagggcagtttcgccatcgcc
aaggatctggctgccaagatcaaggaaggcaaggcgaaaggttga
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