Paracoccus methylovorus: JWJ88_18240
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Entry
JWJ88_18240 CDS
T08684
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmeh
Paracoccus methylovorus
Pathway
pmeh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmeh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWJ88_18240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmeh03019
]
JWJ88_18240
Enzymes [BR:
pmeh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JWJ88_18240
Messenger RNA biogenesis [BR:
pmeh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWJ88_18240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DEDD_Tnp_IS110
CMS1
AAA_22
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QRZ14890
LinkDB
All DBs
Position
2:1014305..1015753
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AA seq
482 aa
AA seq
DB search
MHADTRATWPKDDMTNETTRPSRSGNFRTQQGGKPRFHSDKPKPNTSHRRMRAEPEEKFI
RRAIPDIDTPFTRMGIDPRVAINLEGLGIETPSPIQEKSIPAIVAGRDLLGLAQTGTGKT
AAFGLPMLTRLLNIGRKPEPKTCRALILAPTRELATQIAENIDNYAVGTPIRQFRVVGGA
SINVQVMRMERGVDVLIATPGRLMDLIERGAIDLSQTKYLVLDEADQMLDIGFIHTLRRI
AKMLPRERQTLLFSATMPKLMAELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKA
TLLAEYLSKHTDELAIVFGRTKHGSEKLSKLLEKWGFKVAAIHGNKSQGQRERALSSFRA
GDTKVLVATDVAARGLDIPQVAHIYNYDLPNVAENYVHRIGRTARAGRDGRAIAFCSPTE
IGELRAIEKAMKAKIPVVGGEEPFEVAKIRERGGPAGRGAAQPARKRPARRPSRAPKTAQ
PA
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcacgccgatacgcgggcgacctggccgaaagacgacatgacgaacgagaccacccgc
ccgagccgttcgggaaatttccgcacccaacaaggcggcaagccgcgctttcacagcgac
aagcccaagcccaacaccagtcaccgccggatgcgcgccgagccggaagaaaaattcatc
cgccgtgcgatcccggatatcgacaccccttttacccgcatggggatcgacccgcgcgtg
gcgatcaacctggaggggttgggcatcgagaccccctcgcccatccaggaaaaatccatc
ccggccatcgttgccggtcgcgatcttctgggccttgcccagaccggcaccggcaagacg
gcggccttcggcctgcccatgctgacccggctgctgaacatcggccgcaagcccgagccc
aaaacctgccgcgcgttgattctggcgccgacgcgtgagcttgcgacccagatcgccgag
aacatcgacaattacgccgtcggcacgccgatccggcaattccgcgtcgtgggcggcgcc
tcgatcaacgtgcaggtcatgcggatggaacgcggcgtggatgtgctgatcgccactccg
ggccggctgatggacctgatcgaacgcggcgcgatcgacctgtcgcaaacgaaatatctg
gtgctggacgaggctgaccagatgctggacatcggtttcatccataccctgcgccgtatc
gccaagatgctgccgcgcgaacggcagacgctgctgttctcggccaccatgccgaagctg
atggcggagctggcggacagctatctgaacgacccgctgcgcgtggcggtaaacccgccc
ggtcaggccgcggaaaagatcgatcaaggcgtgcatttcgttaatcagggtgacaaggca
acgctgctggccgagtatctgtccaaacatacggacgagcttgccatcgtcttcggccgc
accaagcacggctcggaaaagctgtcgaagctgttggagaaatggggcttcaaggtcgcc
gcgatccacggcaacaaaagccagggccagcgcgagcgggcactgagcagcttccgcgcc
ggggataccaaggtgctagttgccacggacgtggcggcgcggggcctcgacatcccgcag
gtcgcgcatatctataactacgatttgccgaacgttgcggaaaactatgtccaccgtatc
ggtcgcaccgcgcgcgccggacgtgatggccgggccatcgccttctgttcgcccacagaa
atcggcgagttgcgcgcaatcgaaaaggcgatgaaggccaagatcccggttgtcggcggc
gaggagcccttcgaggtggccaagatccgcgagcgcggcggcccagccggtcgcggcgct
gcccagcccgcgcgcaagcgcccggcacgacggccctcgcgtgcgccgaaaaccgcgcag
ccggcctga
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