Poecilia mexicana (shortfin molly): 106903282
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Entry
106903282 CDS
T08022
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106903282 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmei03021
]
106903282 (polr1a)
Enzymes [BR:
pmei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106903282 (polr1a)
Transcription machinery [BR:
pmei03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
106903282 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
GAGA_bind
Nop14
BUD22
SURF2
Motif
Other DBs
NCBI-GeneID:
106903282
NCBI-ProteinID:
XP_014822463
Ensembl:
ENSPMEG00000006463
LinkDB
All DBs
Position
Unknown
AA seq
1694 aa
AA seq
DB search
MLFSKEVPWRRLEGMSFGLYSPEEIRKLSVKTITNSKFLDAVGNVAQNSLYDLALGPTDI
KEICSTCCQDFNNCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHMLTCPRAAIHLL
VNQLRLLERGAMEEVHLVERVLNQHLEENPKATGDEIEQVLREFTSMVIGTNAEASQNSK
PIKHLVEKKSSLINDFWRVQLNTRKCPYCRVGRSTVRREHNTKLIITMPTGGQTDENTED
LLTGKRVFLTASTAREHISKLWEKEGFFLKFLFPGLEESSGSEGQKSFYPDLFFLELLVV
PPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGIIRKLLTLIAGEKQTEEVEEVTLDPEDQ
TFLSGISGVTLPDKLYNMWIRLQSHVNIVFDSEMDKLITDKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHP
GASMVINEDGRKTILSPSSAAQREAVAKQLLTPCPGPHKMPMKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQTELGRAEAYTLVS
TNQQYLVPKDGKPLAGLIQDHMVSGTKMTIRGCFFTKDQYTELVYRGLTDKTGRIRLLAP
ALLKPQQLWTGKQVVSTLLLNILPDKAVPLNLTGKAKIPGKAWIQLPPRSSPGYNPDSMC
ESQVVIRQGELLVGVLDKAHYGSSPYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGANMRRKQIIQESLKIGTTALQAAFKLPPSMTPAEAASRWQDAHLSP
DQRDFSMADHKFKEVANQVNNDINKVCMPVGLHTPFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
PRQFPFIENNYEVIRKSQNLDSVLARLDPHTAAHHFTAIQRWKAKRELACPRTGAFLLFS
QKKLAKLREAMPSTEPLPAQDPAVLQLVKDWHSLDEAGRAKYARRSSRCPEPTLGLFRPD
VCFGSVSENFHDITEKYLQNRGNATEDDMETQRLRQLLHYKWQRSLCDPGEAVGLLAAQS
IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSIPVLNNKKALKRA
KTLRKQLSRVCLAEVLQKVDVVETLRIETYQRLQLFKVTFHFLPPERYRDDKLLTPHQIL
RYMETRFFRLLLEAIKKRTAKLASIAVETRKATPGDKNMDEDGTAGAQDGGGEEEEEERE
VVDDQGDEGDADASDAKRKSKQAEEVDYESEDEGEGDDAEEDEGEEENSQANAVEETQPE
SADTGEQQQEKKKKKKKKKKEMKAEQEGESSVQMRVNSVLSSNSAIQRYSFDQQEELWCE
VELEFPMNRIHFDLTSVLSTLAQNAVIMETRGLTRCLLSETTTKSGEKQTVLNTEGINMH
EIFKYNDILDVNKLYSNEVHAMASTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVAD
YMCFEGVYKPLNRHAIMSNSSPLQQMTFETSFKFLKQATMLGSRDQLVSPSACLVVGKVV
KGGTGLFELKQPLQ
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttccaaagaagtgccatggcggcggctggagggcatgtcgtttggcttgtac
tcacccgaagaaataaggaagttgagcgtgaaaaccatcaccaactccaagtttctggac
gctgttggaaatgtggcccagaacagtttgtatgacctggctctggggccaacagacatc
aaagagatttgttccacctgctgtcaggatttcaacaactgtccaggacactttggacac
atagagctgcctctaccagtctacaacccactgttctttgataaactctacctgttgatc
cgcggctcgtgcctgtcgtgtcacatgttgacatgtccccgcgccgccatccacctgctg
gtcaaccaactccggttactggagcgtggagccatggaggaggtccaccttgtggagaga
gttcttaatcagcaccttgaagagaaccccaaagccactggagatgagatcgagcaggtg
ctgagggagttcaccagcatggtcattggaacgaacgctgaggcttcacagaactccaaa
cccattaaacatctggttgagaagaagagcagcctgataaacgacttctggagggtccag
ctgaacaccaggaagtgtccgtactgcagagttggcaggtcaacggtgcgtcgcgaacac
aacaccaagctgatcatcaccatgccaacgggaggacaaactgatgaaaacacagaagat
cttctgaccggaaagagagtgttcctcactgccagcaccgccagggagcacatcagtaaa
ctctgggagaaagaaggtttcttcctgaagttcctgtttcctggtctggaggagagctca
gggtctgagggacagaagagtttctacccagacctgttcttcctggagctgctggtggtt
ccaccctgcaggtatcgccccatcaatcgccttggcgaccagatgttcaccaacggccag
acggtcaacatgcaggctgtgatgaaggactgcggcatcatcaggaagcttctgactctc
atagcaggagagaagcaaactgaggaggtggaggaagtgacgttggacccagaggatcag
acattcctgtcaggaattagcggagtgacgttaccagataagctctataacatgtggatc
cgcctgcagagccatgtcaacatcgtcttcgacagtgagatggacaaactgataacggac
aaataccccgggatcagacagatcctggagaagaaggatggattgttccggaagcacatg
atggggaagcgggtggactacgccgcccggtccgtcatctgtcctgacatgtacatcgga
accaacgagatcgggatccccatggtgtttgccaccaagctgacctaccctcagcccgtc
acgccctggaatgtgaaggagctccggcaggccgtcctcaatgggcccaacgtccacccc
ggcgcctccatggtgattaacgaggacggcaggaagaccatcctgtcgccgagcagcgct
gcgcagagggaggcggtcgccaagcaactgctgacgccctgtcccggtccacacaagatg
cccatgaagatcgtgaatcgacacataaagaacggagacgttctgctactcaacagacag
cccaccctgcacagaccctccattcaagcccactgcgctcgcatcttacctggagagaag
gtcctgcggcttcactacgccaactgcaaggcgtacaacgccgactttgacggagacgag
atgaacgcccacttccctcagaccgagctgggccgagccgaggcctacacgttggtcagc
accaaccagcagtacctcgtccccaaggacggtaaacctttagcgggcctcattcaggac
cacatggtgtcaggaaccaagatgaccatcagaggctgcttcttcaccaaggaccagtac
actgagctggtgtaccgagggctgaccgacaagacgggccggatcagactgctggccccg
gccctcctcaaacctcagcagctgtggaccggaaagcaggtcgtctccactttactgctg
aacatcctcccagacaaagccgtcccccttaacctcactggcaaagccaaaatccccggc
aaggcttggatccagctgccacctcgatcttctccagggtacaacccggatagcatgtgt
gagtcacaggtggtgatccgtcagggcgagctgctggtcggcgttctggataaagcgcac
tacggctcgtcgccctacggtttggtccactgctgctatgaactgtacggaggggagacc
agcgggaagctgctcagctgcctggctcgactcttcaccgcctacctgcagctctacaga
ggcttcactctgggagtggaagacattctggtgaaacctggagccaatatgcgaaggaaa
caaatcatccaagagtctctgaaaatcggcaccacggccttgcaagctgccttcaaactg
cctcccagcatgactccggctgaagccgccagtcggtggcaggacgctcacctcagcccc
gaccagagagacttcagcatggccgatcacaaattcaaggaagtggccaaccaagtgaac
aacgacatcaacaaggtgtgtatgccggtcggactgcacaccccgttcccagacaacaac
ctccagctcatggtgcagtctggagctaaaggctccaccgtcaacaccatgcagatctcc
tgcctgctgggtcagatcgagctggagggccgcaggccgccactgatgccatcaggaaag
tttctgccttgctttcagccgtacgacccttcacccggagcagggggcttcgtttctgga
cgcttcctcacaggaatcaagccacaggagtttttcttccattgcatggctgggagagaa
ggcctggtggacacagctgtgaaaacgtcccgatcaggatatctgcagagatgcatcata
aagcacctggagggtctggtggtgcagtacgacctgaccgtcagagacagcgacggctcc
gtggtccagttcctgtatggcgaggatgggctggacatccccaagacccagttcctgcag
ccgaggcagttcccgttcatcgagaacaactacgaggtcatcaggaagtcacagaacctg
gacagcgttctggcccgtttggaccctcacactgcagcccaccacttcacagccatccag
cgctggaaagcaaagagagagctggcgtgtccccgcacaggagcctttctactgttttcc
caaaagaagctagcgaaactacgagaggccatgccgtcaacagagccgctgcctgctcaa
gaccctgcggtgctgcagttggtgaaggactggcactctctggatgaagccggcagagcc
aaatacgccaggcggtcgtcccgctgccccgagccgaccctgggcctgttcaggcccgac
gtctgcttcgggtcggtgtcggaaaacttccatgacatcaccgagaaataccttcagaac
agaggcaacgccacagaagatgacatggagacacagaggctgcggcagctgctccactat
aagtggcagcgctccctgtgtgacccaggggaagctgtgggcctgctggcggctcagtcc
ataggcgagccctccacccagatgaccctcaacaccttccacttcgcgggcagaggagag
atgaacgtcactctgggaatccctcgactgagggagatcctaatggtggccagttccaac
attaaaacccccatgatgagcatcccggtgctgaacaacaagaaggccttgaagagggcc
aaaaccctgcgaaagcagctcagcagagtctgcctggctgaggtgctgcagaaggtggat
gttgtcgagacgcttcggatcgaaacttatcaaagactgcaattgtttaaagtcaccttt
cacttcctccctcccgagcgttaccgtgacgacaagcttttaactccccatcagatcctc
cgctacatggagacgaggtttttccgtctcctcctggaagccattaaaaagcgcacagct
aagctggcctccatcgccgtggagacgaggaaggccacccctggagataaaaacatggac
gaggacgggaccgcgggggcccaggacggcggtggagaagaggaggaggaggaaagagag
gtggttgatgaccagggggatgaaggagacgccgacgcgtcagacgccaagaggaaaagc
aagcaggcggaggaggtagactacgaaagcgaagacgagggcgaaggcgacgatgccgaa
gaggatgagggcgaagaggagaacagccaggcaaacgctgtggaggagacccagcctgag
tcagcagacactggagagcagcagcaggagaagaagaagaagaagaagaagaagaagaaa
gaaatgaaagcggagcaagagggagagtcctcggtccagatgagggtgaactcggttctg
tcgtctaactcggccatacagagatactccttcgatcagcaggaagaactctggtgtgag
gtggagctggaattccccatgaacaggatccacttcgacctgacctcggtcctgtcgact
ctggcccagaacgccgtcatcatggagacccggggcctgacgcggtgcctgctgagcgag
accacgaccaagtctggggaaaaacagacggttctcaacacagagggcatcaatatgcat
gaaatctttaagtacaacgatatcctggacgtcaacaaactgtactccaatgaggtccat
gccatggccagcacctacgggatcgaggtggctctgaaagtcatagagaaggagatcaaa
gacgtctttgcagtttatgggattgaggttgaccccaggcatctgtcattggtggcagac
tacatgtgtttcgaaggcgtctacaagccgttaaaccgacacgccatcatgtcgaactcg
tcccctctgcagcagatgaccttcgagaccagcttcaagttcctcaaacaggccaccatg
ctggggtcacgtgatcagctggtttcaccctccgcctgcttggttgtggggaaggtggtc
aaaggtggaacagggctgtttgaactgaagcagcctctgcagtag
DBGET
integrated database retrieval system
