Poecilia mexicana (shortfin molly): 106906202
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Entry
106906202 CDS
T08022
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106906202
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmei00536
]
106906202
Glycosaminoglycan binding proteins [BR:
pmei00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106906202
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
106906202
NCBI-ProteinID:
XP_014826853
LinkDB
All DBs
Position
Unknown
AA seq
1707 aa
AA seq
DB search
MQQIFSDRFSDEFSLLVQLRSLQRDEQSVFTLLSPDSHITLQVRISAYAIIFIGTQQRHY
EFPINGLCDGDWHRVAFSVSRNQLQLFVDCSLLESVDWVNHGLDIGSDGLLMVGGILESF
ETPFEGELRQLSFLLDDPDGAQQHCSHYPPRCSRSAPKPPRSPRTNIALENESQRQELSR
GDGTMPSRPNRKGSVGRGDVFVVEEDTDLLDPIFQSGGVVNPQWKPSRNGLKGNQKGKPD
PSSKKVEENITTEKKTDSRTSVEFPLKPSDNIIDLDVGGSPKKPSLGIPLLPKTPRVSNE
LIEEFPEEISTVSPATSQAPITVQTTKSPVDQNRHEGKETEPERGSPRIVTIVSREGDLV
LGSDGKTYRLRRGRPGRIGAPGPDGCPGDPGPAGVKGEKGKKGIRGRAGRMGQPGSPGRP
GLPTFYLWRNTAEEWAAFRQTNFYQLLSVGWPTKEGPAGPRGEMGKPGIQGPPGEPGEDG
QPGIPGEMGDPGPRGPPGRPGTPGRDGYDGTDGQPGAPGPPGSHGPWGHRGERGPKGEKG
DEGLVGDRGPCGETGGPGEKGEAGLPGPPGPIGPPGHQGVRGAEGEEGPAGPDGQSGLDG
PSGPPGPPGVPGLTGPVGAQGANGSRGEMGPAGGVGPQGPQGPPGLQGPIGPPGHRGPQG
HPGLTGAAGPKGDPGPLGPAGPRGDPGIEGPTGLPGRPGHLGFPGALGNRGADGDKGDAG
PKGDRGVPGATGVRGPQGERGPIGLPGFPGASGPPGPAGTEGTDGEGGLPGKQGSQGLKG
NRGQDGRPGKPGPRGSKGLAGLRGHPGQPGPMGFSGQTGPQGAEGKPGTQGLQGADGGAG
FRGSRGFPGNAGERGADGPPGSPGPPGKTGPPGSPGPPGEKGFTGKPGLEGPQGPVGMYG
VVGAVGMRGPAGSMGERGEPGIRGLPGPTGKTGPKGVPGSAGEKGPRGSQGRPGDEGPKG
VLGPPGPPGLPGPSGGTGKPGPRGSIGAPGPQGLQGPAGIPGSQGADGSVGAAGEKGPRG
FPGLPGDPGPPGLSGPQGLPGLGGTEGPTGRKGDQGDLGSCGALGAQGPEGERGSEGAKG
PRGPPGPDGREGEIGLPGEPGEPGSKGEKGNVGPPGPTGPEGPWGSIGENGLQGPKGEKG
NIGRTGEPGAAGGPGPVGLSGLQGIAGRPGRPGPDGPPGQKGEPGPAGLSGPPGSDGPQG
VIGPRGVRGDPGGFGPPGQIGQAGPKGDEGAKGEPGAIGVRGEPGVPGPPGEQGEEGLPG
IQGPSGLPGLEGPPGQMGAQGPPGLVGAPGTYGKPGSEGKQGAKGEKGDDGVIGPSGKTG
PMGRRGKRGKAGVRGTRGDRGPKGEAGEKGTTGLLGWPGSIGIPGLPGDLGDQGEKGQEG
EKGDIGIPGPPGPEGRKGSRGPVGLTGPAGQKGEQGNIGPPGPRGALGMPGLPGWFGLKG
LKGYQGQPGLPGRRGLPGPPGVAGPPGKSLNMTFTQLKSLMYMSDKPNLSLLQTLLDALQ
QELQLLQDPPDGTKQRPATTCLELWLCHPEFSSGMYYIDPNQGSSADALLAYCSFTSSSK
QTCLHPEHSQLPMKAWMEESAGDGSFQWLSRLDQGHQFSYPGESVVQMRFLRLHSVSASQ
RVTYSCHPGSRLGPTDTEVKFLTDTRMQSYLGELNDCVPVEEAVSGSGESVLEFEDLQLL
PLRDVALMNSGNFTHQFSLTIGPVCFS
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagattttcagcgacaggttttcagatgagttcagtttgctggtgcagctccgc
agtctgcagagggacgagcagagcgtgttcaccttgctcagcccggacagccacatcacg
ctgcaggtccggatcagcgcctacgccatcattttcatcgggactcaacagcgccactac
gagttccccatcaatgggctgtgtgatggagactggcatcgcgttgccttcagtgtctcc
aggaatcagctgcagctgtttgtggattgctcgctgctggagagcgtggactgggtcaac
cacggcctggacatcggttctgatggactcctcatggtcggaggcatcctggagagtttt
gaaactccatttgaaggggagctgcgccagctgtccttcttgttggatgaccctgacggc
gcccagcagcactgcagccactacccgccccgctgcagccgctccgctcccaaacctccc
cgctccccgcgcaccaacatcgccctggagaatgaatctcagcgccaagagttgtctcgt
ggcgatgggacgatgccgtccaggccgaaccgaaagggttcagtgggacgtggagacgtt
ttcgtggttgaagaggacactgatctgttggatcccatctttcaaagcggtggagtcgtg
aaccctcagtggaaaccttctagaaatggactgaagggaaaccagaagggcaaaccggac
ccatcgtctaaaaaagtggaggagaacattacaacagagaaaaagacagactctaggact
tcagtggagtttcctctgaaaccctcggataatataatcgacttggatgttggaggttcc
ccaaagaagccctcactgggaattcctctgcttcccaagactcctagagtttcaaatgaa
ctaatagaggaatttccagaggagatcagcacagtttcacctgctaccagtcaggcccca
atcactgtccagaccaccaaatcaccggtggatcaaaacaggcatgaagggaaagaaaca
gaaccagagagaggaagccctcggattgtgaccattgtatccagagaaggagatctggtc
ctgggatctgatgggaaaacgtaccggctccggaggggacgacccggcaggataggagcc
cccggaccagatggatgcccgggtgatcctggtcctgctggggtcaaaggtgaaaagggt
aaaaaaggcattagaggcagagcgggaaggatgggccagccggggtcgccgggtcgtcca
ggtttaccaacattttacctgtggaggaacacagctgaggaatgggctgcttttaggcaa
actaatttctaccagctactgtcggttggttggcctactaaggaaggacctgcaggacct
cgtggagagatgggaaaacccggcatacaggggccgcctggtgaacctggagaggacgga
caaccagggatcccgggagaaatgggggacccaggccccagggggcccccaggacggcct
gggaccccaggcagagatgggtacgacgggacagacggtcagccaggggctcctggacct
cctggatcgcatgggccgtggggccacagaggagaacgaggaccaaagggagagaaaggc
gacgagggtctggttggcgaccgcgggccctgtggggaaactggtgggcctggtgagaag
ggtgaagctgggctgccaggtccccctggtcctataggacctccaggacaccagggggtc
cgaggtgcagagggggaggaaggacccgctggacccgacgggcagagcggactggacggc
ccctcgggccccccagggccaccaggagtgccgggtttgaccggaccagttggtgctcaa
ggagcaaacggctccaggggtgaaatgggcccagctggtggcgttggcccccaggggcct
caggggcctccgggcctgcaggggccgatcggacctccaggacacagaggacctcagggt
cacccaggactgacgggcgctgctgggccgaaaggagatcctgggcctctggggccggcg
ggccctcggggggatcctggcattgagggccccacgggtttgccaggcaggccgggtcat
ctgggtttccccggagccttggggaaccgaggagccgatggagacaaaggagacgcagga
cctaaaggcgacagaggagttccaggggccacaggcgtccggggccctcagggggagcgg
ggccccatcggtctgcccggcttccccggggccagcgggccgccgggccctgcaggtact
gaggggacggacggtgagggcggcctgccggggaaacagggcagccaggggttaaagggg
aacagaggacaagatggccgacctgggaaacccggaccaagaggcagcaagggtttggct
ggactgaggggccatcccggccaaccgggcccaatgggtttctctgggcaaacgggaccg
cagggagcagaaggaaagcctggtacacagggtttgcagggcgcagacggcggcgctggc
ttcagaggctccaggggttttccaggaaatgctggtgagagaggagcagacgggccgccc
ggttctccggggccaccagggaagacggggcccccgggctctccgggtccaccaggagaa
aaaggtttcacggggaaaccgggcctggaaggacctcagggcccagttggcatgtatggt
gtggtgggggctgtgggcatgcgagggcctgcaggatcaatgggagaacggggtgaaccg
gggattagaggattaccgggccccactgggaaaacgggtccaaaaggtgtgccaggctct
gctggagagaaaggacctcgcggatctcagggccgacctggagatgaaggacccaaagga
gtcctgggaccgcctggccctcctggtcttccaggtcccagcggtgggacgggcaaacct
ggacccagaggaagcatcggggccccggggcctcaggggctgcaggggccagcaggaatc
ccaggctcacagggcgctgatggctcagtgggagcagcaggagagaaaggacccaggggt
ttccccggactgccaggcgacccaggacccccaggactgagtggaccacagggtcttcct
ggtcttggaggaactgagggtccaactggaaggaaaggagatcagggggatctgggttcg
tgtggagcgctcggagctcaggggcccgaaggggaacgaggatccgagggagcaaaaggc
ccccgggggccgccagggccagacggcagagagggggaaatcgggcttcctggtgaacct
ggagagcctggatccaaaggagagaagggcaacgtgggacctcctggtccgaccggccca
gagggcccctgggggtccatcggggaaaatgggctccaggggccaaagggagaaaaggga
aacatcgggagaacaggagagcctggagcggctggaggtccgggtcctgtgggtctgtct
gggctccagggcatcgcgggtcgaccaggacgaccaggacctgatggaccgccgggacag
aagggggaacctgggccagccggactctctgggcctccaggatcagacggtcctcaggga
gtcatcggacccagaggggtcagaggagaccctggaggattcggaccgcctggtcaaatt
ggtcaagctggaccaaagggggatgaaggagccaaaggtgaacccggggcgataggggtc
agaggtgaaccaggagtaccaggcccaccaggagaacagggtgaagaaggtcttccagga
atccaaggtccttcaggtctaccggggttggagggacccccaggacagatgggagctcag
ggtcctcccggccttgtaggggctcctgggacatatggaaaacctggatctgaagggaaa
caaggcgccaaaggagagaagggagatgatggtgtaattggaccttcagggaaaaccggt
cccatgggaaggagggggaaacgaggaaaggctggagtcagagggaccaggggagacaga
ggaccgaagggtgaagcaggagaaaaggggacgacaggccttcttggctggccaggaagc
atcggaattcctgggctgcctggagatctgggggatcaaggtgaaaagggacaagagggt
gagaaaggagacatagggatacctggaccccctggacctgagggcagaaaggggagtcga
ggtccagtcggattgaccggtccagctggccagaaaggagagcagggaaacatcggtccg
cccgggccgagaggagcgctgggaatgcccggcttacctggatggttcggattaaagggg
ttgaaaggttaccaaggtcaacctggacttcctggaaggagaggcctccctggcccacct
ggtgtcgctggccccccaggaaagtcactgaacatgactttcactcaactaaagagcctg
atgtacatgtcggacaagccgaacttgtcgctgctccagacgctgctggacgccctgcag
caggagctgcagctgctgcaggatcctcccgacggcaccaagcagcgcccggccaccacc
tgcctggagctctggctctgccaccccgagttcagcagcggcatgtattacatcgacccc
aaccagggcagctccgccgacgctctgctggcctactgcagcttcacctcctcatcgaag
cagacctgccttcaccccgaacactcccagctgccgatgaaagcttggatggaggaatca
gctggagacggatcgtttcagtggctcagcaggctggatcagggtcaccagttttcttat
ccaggtgagagtgtggtgcagatgcgtttcctgcggctgcacagcgtctctgcgtctcag
agggtgacctactcctgtcatccaggaagccgtctgggtccgaccgacacggaggtgaaa
ttcctcactgacaccaggatgcaaagctacctcggagagctgaacgactgtgtgccagtg
gaggaggcggtttccggttctggagagtcggtgttggagttcgaggacctgcagctgctt
cctctcagagacgtggcgctgatgaacagcgggaacttcacgcaccagttcagcctcact
atcggacccgtgtgtttcagctag
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integrated database retrieval system
