Poecilia mexicana (shortfin molly): 106906886
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Entry
106906886 CDS
T08022
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03030
DNA replication
pmei03420
Nucleotide excision repair
pmei03430
Mismatch repair
pmei03440
Homologous recombination
pmei03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106906886
03420 Nucleotide excision repair
106906886
03430 Mismatch repair
106906886
03440 Homologous recombination
106906886
03460 Fanconi anemia pathway
106906886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmei03000
]
106906886
03032 DNA replication proteins [BR:
pmei03032
]
106906886
03400 DNA repair and recombination proteins [BR:
pmei03400
]
106906886
Transcription factors [BR:
pmei03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
106906886
DNA replication proteins [BR:
pmei03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
106906886
DNA repair and recombination proteins [BR:
pmei03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
106906886
MMR (mismatch excision repair)
106906886
DSBR (double strand breaks repair)
HR (homologous recombination)
106906886
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Extensin_1
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
106906886
NCBI-ProteinID:
XP_014827838
Ensembl:
ENSPMEG00000003627
LinkDB
All DBs
Position
Unknown
AA seq
648 aa
AA seq
DB search
MTAKLTQGAVEALVKGSHVENPVLQLLNIRQINTTGVPRYRLMMSDGQHYLSSFLMATQL
NHLAEENLLVPHCVCLLKRMTNNTLSDGRHVVVVVDMDVLKSAEEAGGKIGNPTSYSTDG
KLSSPNKVSSTTSEPSSTSAAEVPGPSNNSKGRGKGFTGKAPVKASPMKTFPMKGSPMKA
SPMMTSPMKGSPMKASPMMTSPMKGSPMKASTSSPGSVPKVMPIATLNPYNNKWTIRARV
TNKSNIRNWSNSRGEGKLFSFEVVDESGEIRITAFNNEVDKFFALLEQGKVYYISKATLK
VANKQYTTLKNDYEMTLHAHSSIVPCTDGQDVPVMQCDFVPIGELENRDKDSIVDIIGVC
NSAEDVSRITTKTSREVSKRAISLIDTTGKVVTVTLWGEEAEKFDDSGQPVVAIKGARLS
DFRGISLTALFSSTITVNPDLPEAFRLRAWYDREGYAVDSQSLTETVSVGVGSKMNWKTL
SDVKNENMGHGEKADYFSCVATIVYMRKENCLYQACPSSDCNKKVIDQQNGFYRCEKCNR
EFPNFKYRLLLSANLADFGDNQWVTCFQETAEVLLGRKAEELGQLRETDEEGFDEVFQKA
NFSTHIFKNRVKLETYNVSTNKQKKYISIWCKGIHLFPRHKTTKYCFV
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgaaactaacacagggggcagttgaagccctggtcaaaggatcccatgtagag
aatccggtgctgcagttactgaacattcgtcagattaataccacaggtgtgcccaggtac
cgcctcatgatgagtgatggtcagcactacttgtcttccttcctgatggccacccagttg
aaccatctggcagaagagaacctccttgtaccacattgtgtgtgtttgttaaaaaggatg
accaataacactttgtcagatggccggcacgtggtcgtcgtcgtggacatggatgtcttg
aagtcagcagaagaagctggaggaaagattggaaatcccacctcatattcaacagatggc
aagttgtcatctccaaataaggtgtcatcaaccacctcggaaccatcgtccacttcagcc
gctgaggtacctggaccatccaacaacagcaaaggacggggaaaaggtttcactggaaaa
gctcctgtgaaggcttcaccaatgaagacctttcccatgaaagggtcacccatgaaggct
tcaccaatgatgacctctcccatgaaagggtcacccatgaaggcttcaccaatgatgacc
tcccccatgaaagggtcacccatgaaggcgtccaccagctcaccaggttctgtcccaaaa
gtgatgcctatcgctaccctcaacccgtacaacaacaagtggactatcagagccagagtc
acaaacaaatccaatatccgcaactggagtaactccagaggggagggcaagctcttctcc
tttgaggtcgtggatgagagtggtgaaatcaggatcacagccttcaacaatgaagtggac
aagttttttgctctgttggagcaaggcaaggtgtactacatctcgaaggcgactctgaag
gtagccaacaaacagtatacgacactgaagaacgactacgagatgaccctccacgctcat
tcatctatcgtaccctgtacggacggtcaggatgtcccagtaatgcagtgcgactttgtg
cccattggagagctggaaaaccgagacaaagactccatcgttgatataattggagtgtgc
aacagtgcagaggatgtatcccgtatcaccactaagaccagcagggaagtctccaagagg
gccatcagcctaatagacaccactggcaaagtggtgacagtcacactgtggggagaagag
gcggaaaagtttgacgactccggacagcctgttgttgccatcaaaggagctcgcttgtct
gattttcggggcatatctctcacagctttgttcagttctacaatcacggtgaacccagat
ttacccgaagccttcagactcagggcctggtatgaccgggaaggttatgcagttgacagc
cagtcgctaacagaaaccgtgtcagtcggtgttggatcgaagatgaactggaaaacgctg
agcgatgttaagaatgaaaacatgggacacggagaaaaggcagactattttagctgcgtg
gcaactatagtttacatgcgtaaagaaaattgtttgtatcaagcatgtccgtcttcagac
tgcaacaagaaggtcatagatcaacagaatggtttttatcgctgcgagaagtgtaacaga
gagttccccaacttcaaatatagactcctactttcagctaacttggcagacttcggggat
aaccagtgggtgacatgcttccaggagacagctgaggtcctgctgggtcgcaaggcagaa
gagctgggacagctcagagaaacagacgaggaagggtttgatgaagtcttccagaaagcc
aacttctctacccacatctttaagaaccgagtcaagctggagacgtataatgtaagtacc
aataaacagaaaaagtatataagtatatggtgcaaaggaattcacttgtttccaagacat
aagactacaaaatactgctttgtatga
DBGET
integrated database retrieval system
