Poecilia mexicana (shortfin molly): 106908818
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Entry
106908818 CDS
T08022
Symbol
vps13c
Name
(RefSeq) vacuolar protein sorting-associated protein 13C
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
pmei
Poecilia mexicana (shortfin molly)
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmei04131
]
106908818 (vps13c)
Membrane trafficking [BR:
pmei04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
106908818 (vps13c)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_M
VPS13_VAB
VPS13_C
VPS13_N
WWE
Motif
Other DBs
NCBI-GeneID:
106908818
NCBI-ProteinID:
XP_014830527
Ensembl:
ENSPMEG00000011994
LinkDB
All DBs
Position
Unknown
AA seq
2367 aa
AA seq
DB search
RPKSEFTATGKAELSGQPEPEPRRSDGQTASASEGPPADDVVKVLVDFEVKEVLLSLKKR
LDQQEAPFLVLQLDQLGIHTKVRMFDLCATTYIRRVSMKSLEFKDAGGDPLCLISSSAES
GAELLKVEFCKADRTGPEFCSVYKNTEQIIRVMFSSLDVLLHTQALLSAANFLSMTLSSS
SSVPPAEKDVRQKTEDKMATSRSGVPVSHADPEVVDLKATMTLGAFNILVCDQTSNMADI
RVTGLDTSLLRRGDQTQISARLRDVVVLDVDPRSVHKEAVSIVGDEVFSFSMSLTPNATE
GAGYADTSKTDGQVKLRVGCIRVVYLHRFIMSLLNFSNNFQAAKEALSSATTQAAEKAAS
SVLAQRTFRLSLDVWVKAPLIIIPQSSTSHNALVMDLGLITVGNSFSVLPAGERPLPAVV
DNMAVQLSELHLSRTWLDSGSEKPSVELLRPVNLQLSIRRNLAASWYHKMAAVELDGDLR
PTELELSQDDLRVTLQILTENLAEAGGLNGGAAPKEVRLQVPAVAAPPAGEPGKPAGRGE
RDEDEAVETLKFSFNVQSLGLVLYHDDPKQQPAGLGHQQNLRLGQLVLRLMKASGRVQSN
GSMEVNTVLTACTLDDLRAGLNRVTSRMVGQRDEGVSQAMVDVTLRQGPVERDLVAVLQK
LYLCASVEFLMAVADFFLQALPPSLAAAVPAAPSNKLPLKQIAEPRSETKPATALTTRLR
AVVVDPEVVFVADLMKADAPALVASFQGDFNLLVEADGSQSVRANLRELKVLAGPFIQSK
ENRAVTTVLQPCSVTLETRTSRTRPASGSVTVEDVIVKISPVILNTVMTITAGMTAKPPA
EPGRASPVEVGDLWSVMNIYNCNFWYLGVDQATEITESYRESDGSTEGETFTAQVKVVQV
TLESGLGHRTVPLLLAETSLNGVAKNWSSLLQLQADLVLEVNYFNEVHAVWEPLIERVDS
GRRRWNLELEIKNNPVMDKSPVHGDDFVFLPEPRTAISICSKDTLNITISKSSLSVFQKL
AEAFSEGAASAFDYTLKEKPPFTLRNALGIPIIVQHSANLRPVGSVAQGKLHELPVDQSM
DLMHSAFESTIRGKLSALQRQESGLFNLTIVPSGYSEISNIAVDNPGRRLYNVRGPMLQE
AVSVLLQIDAAEGNKIITVRSPLQIINHFTEPFTILKYCPASRTLQSIGTAEPEREFHVD
LEAYRCQLFVRPAGQLDGLYGPSSSCVAWKEQVHCSSEVQSVLQCPASDSNLLPLMVSTL
AVPDDLRHISSRGEEDWDPAYILHLHPMAALCNLLPYTVSYIMENSAEVCEIQEGSTSDL
LNARVSGEIMSVALIQYQGRGWHGHIQIKQELPEFFAVCLTCDTDAALTVDVSVHVMKTA
SRVLLSLFSPYWIINKTSRVLQYSSEDAVFKHPAEYRDVVLFSFKKSNLFTKSKLQLCIS
TSSFSDGFSLDTVGSYGCVRCPSTNMDFLVGVSIQMSSFNLTRIVTFSPFYTLVNKSSYE
LEVGELLSQTATRWHYVPSTECLPLWPENGSNKLCVRVVGSLSHSKFFFFSQQDNGTLLS
MDMCGGIMVDINVSNHATIISFSEYYDGAAPALLINHTPWATISYRQSGSEVIHKLEPCE
ARRFVWDDPAGTRKLCWSCKEHSGELDLLQDDVSQFTYDGQAQIHWVSFLDGRQRVLLFT
EDTGVVTKARQSEELEQCQQELKVSLQNLGLSLINNGNRQEIAYIGITSSGVVWEFKPKN
RWKSFSQKNINQLEKVYQSQLSGKTEGGWVRLDSNLEVNLRPAVMMMRQPHSCPVRRNFL
SGIQVEFKRSLHQRSLRAQLHWLQVDNQLPGAVFPIIFHPVPPPKSIALDSEPKPFIDVS
VITRFNQHSNVTQIKYFMALVQEMALKIDQGFLDAVAALFSPAANLQNDRKKSGLIEGDL
KRLQAEPTDASLSDVSGLSFFEHFHISPVKLHLSLSLGSSDGDSVQENPITQSLNLVLKS
IGATLTNVDDIIFKLAFFEVRYQFYSKENLMWAVGRHYSEEFLKQMYVLVLGLDVLGNPF
GVIRGLSQGVEAFFYEPFQGAVEGPEEFAEGLAIGVRSLFGSTVGGAAGMFSKITGSMGK
GLAAMTMDKEFQQERREDMNRPAKDFKDSLAKGGKGLLKGVVGGVTGIVTKPVEGAKKEG
AAGFFKGIGKGLVGVVARPTGGIVDMASSTLQGIQRGPTRAAEATEEVTKLRPARLIRED
GIIRPYDLTESQGFDLYQRIKHLDGEVFRSCSPTPGHRKSNIIITNRRVFCVKEIDLLGH
LTTDWECWFENFHRPPAVSGSELRIYCKEIHKLMLPKNQEPVRTIRFKDPNSAQKLHEAI
WDAQDAQKQHHMVRQKSQRFLRLSKKQ
NT seq
7104 nt
NT seq
+upstream
nt +downstream
nt
agacctaaatctgagtttaccgccacagggaaggcggagcttagcgggcagcccgaaccg
gagccgcgacggtctgatggtcagacggcctctgctagtgaaggaccgcctgcagacgac
gtcgtcaaagttctggttgactttgaagtcaaagaggtgttgctgtccctcaagaagcgg
cttgaccagcaggaggcgccgttcctggtgctccaactcgaccagctgggaatccacacc
aaggtccgcatgttcgacctgtgcgccaccacctacattagacgggtttccatgaagagc
ctagagttcaaagacgccggcggcgacccgctgtgtctcatcagctcctcggctgagtcc
ggcgccgagctgctcaaggtggagttctgcaaggcagaccgcaccggaccagagttctgc
tccgtctacaagaacacggagcaaataatccgggtgatgttctcgtctctggacgtcctg
ctccacacccaggctctcctgtccgctgccaacttcctgtccatgactctgtcgtcgtcc
agcagcgtgccacctgcagagaaggacgtccggcagaagacggaagacaagatggcgact
tccaggtccggtgtcccggtctcacatgcagacccggaggtggtggacctgaaggcgacg
atgacgctgggagccttcaacatcctggtgtgtgaccagacctccaacatggctgacatc
agagtcacagggttggacacctcgctgctgaggcgaggcgatcagacacagatatcggcc
cggctgcgggacgtcgtcgtcctggacgtagatcccaggtccgtccacaaggaggccgtc
tccatcgtgggagacgaggtgttcagcttcagcatgagtctgactcccaacgccaccgag
ggcgccggctacgccgacacctctaagacggacggccaggtgaagctgagggtggggtgt
atccgggtggtctacctgcacaggttcatcatgtctctgctgaacttcagcaacaacttc
caggcagcaaaagaggcgctgagctcggcgacgacgcaggctgcagagaaagccgcgtcc
agcgtcttggcccagaggacgttccgtctgtccttggacgtctgggtgaaggctcccctc
atcatcatcccccagtcctccacttcccataatgcacttgtgatggacctgggtctcatt
acggtggggaacagtttctctgtgctgccggcgggagagcgccccctgcctgctgtggtc
gacaacatggctgtgcagctgtctgagctgcacctgtccagaacctggttggactccggg
tccgagaagccgagcgtcgagctgctgaggccggtgaacctgcagctcagcatcaggagg
aacctggcggcgtcctggtaccacaagatggccgccgtggagctggatggagacctgagg
cccacggagctggagctcagccaggacgacctcagggtcacactgcagatcctgacggag
aacctggcagaagccggcggtctgaatggcggcgccgccccaaaagaggtccgcctgcag
gttccagcggtcgcggcgccccctgcaggtgagcctgggaagccagctgggagaggagag
cgagacgaggatgaagccgtggagacgctgaagttttccttcaacgtccagtctctgggt
ctggttctgtaccacgacgacccgaaacagcagcccgcgggccttggccaccagcagaac
ctcagactgggccagctggttctgcgtctgatgaaggcttcaggacgggtccagtccaac
ggcagcatggaggtgaacacggttctgacggcgtgcactctggacgacctgcgggccgga
ctgaaccgggtcacgtcacggatggtgggacagagggacgagggcgtctcccaggccatg
gtggacgtgacgctccgccagggtccagtagaacgagacctggtggccgtcctgcagaag
ctctacctgtgtgccagcgtggagttcctcatggcagtcgcagatttcttcctgcaggct
ctgcctccgagtctggctgcagccgttcctgctgccccgagcaacaagctgccactgaag
cagatcgcagaaccacggagcgaaactaaacccgccacggcgctgacgacccggctgcgg
gcggtcgtcgtggacccggaggtggtgtttgtggccgacctgatgaaggcggacgcgccg
gcgctcgtcgcctcgtttcagggcgacttcaacctgctggtggaggcggacggatcgcag
agcgtaagggccaacctgagggagctgaaggttctggccggcccgttcattcagagcaag
gagaacagagccgtgaccactgtgctgcagccctgctctgtcacactggaaaccagaacc
agtcggacccggccagccagcggctcggtgacggtggaggatgtcatcgttaagatctct
ccggtcatcctcaacacggtgatgacgataacggccggcatgacggcgaagccgccggcc
gagccgggtcgggcgtctccggtggaggtcggtgacctgtggtccgtcatgaacatctac
aactgcaacttctggtacctgggggtggaccaggccaccgagatcacagagagctaccgg
gagtctgacggcagcaccgagggggaaaccttcaccgcgcaggtcaaggtggtccaggtg
acgctggagtcgggtttgggccatcggacggtcccgctgctgctggctgagacgtccctt
aacggagtggccaagaactggtcgtctctgctgcagctgcaggccgacttggtgctggag
gtgaactattttaacgaggtccacgccgtgtgggaaccgctaatagagcgagtggacagc
ggccggcgccgctggaacctggagctggagattaagaataatccagtcatggacaagagt
cctgtgcatggagatgactttgtgtttcttcctgaacctcgaactgccatcagcatctgc
tccaaagacaccctgaacatcaccatctcaaagtccagcctcagcgtcttccaaaagctt
gcagaggcattcagtgagggagcagcctcagccttcgactacactctgaaggagaaacct
cccttcaccctgagaaatgctctaggcatcccaattatcgtgcagcacagcgccaacctg
aggccggtcggatctgtggcacaaggaaaacttcacgagctgccggtggatcagagcatg
gacctgatgcactctgcttttgaatccacaatcagagggaaactgtcagctctgcagcgt
caggagagcggcctgtttaacctcaccatcgtgccttctgggtacagcgagatctccaac
atcgccgtggataatcctggcagacgtctctacaacgtgcgaggtccgatgctgcaggag
gcggtgtcggtgctgctgcagattgatgctgctgaaggcaacaagatcatcactgtacgc
tcccccctgcagattataaaccacttcacagaacccttcaccatcctgaaatactgccca
gcatccagaaccctgcagagcatcggcacagcggagccggaacgggagtttcatgttgat
ctagaagcatacaggtgccagctgtttgtccgtccagcgggtcagctggacgggctgtac
ggtccgtcttccagctgcgtggcctggaaggagcaggtccactgcagctctgaggtccag
tccgtgctgcagtgtcctgcgtcggacagcaacctgctgccgctcatggtcagcacgctg
gccgtccctgacgacctgcggcacatcagcagccgcggtgaggaggactgggaccccgcc
tacatcctccacctgcatccaatggcagcgctgtgcaacctgctgccgtacaccgtcagc
tacatcatggagaactcggctgaagtctgtgagattcaggagggcagcacctcagacctg
ctgaacgcccgcgtgtcgggtgagatcatgtctgtggcgctgatccagtaccagggccgg
ggctggcacggacacatccagattaaacaggaactgccggagtttttcgccgtgtgcctg
acctgcgacacggatgcggcgctgacggtggacgtgagcgttcacgtgatgaagaccgcg
agccgcgtcctgctctcgctcttcagtccgtactggatcatcaacaagacgagccgggtg
cttcagtacagctcagaggacgccgtcttcaagcatccggccgagtaccgagacgtcgtc
ctcttctccttcaagaaatcaaatctgttcaccaaaagcaagctgcagctctgcatctcc
accagctccttttctgacggcttctccctggacacagtggggagctacggttgcgtccgc
tgtccctccaccaacatggactttctggtgggtgtcagcatccagatgagcagcttcaac
ctgaccagaatcgtcaccttcagtccgttctacacgctggtcaacaagtcttcatacgaa
ctggaggtgggagaactcctcagccagacggccaccaggtggcactacgttccgtccacc
gagtgcctccctctgtggccggagaatggctccaacaagctttgtgtccgagtggtggga
tcactgtcccactccaagttcttcttcttcagtcagcaagacaacggcaccctgctgagc
atggacatgtgtggagggatcatggtggacatcaacgtctccaatcacgccaccatcatc
agcttcagtgaatattatgacggagccgcccccgccctgctgattaaccacacgccctgg
gccaccatcagctacaggcagagtggttcagaggtgatccacaagctggaaccctgcgag
gcccgacgctttgtttgggacgaccctgcaggaacccgcaagctctgctggagctgcaag
gagcattcaggggagctggacctgctgcaggatgatgtgagtcagtttacctatgatggc
caggctcagatccactgggtgtccttcctggatggacggcagcgggtgctgctgttcacc
gaggacactggcgtggtcaccaaggctcggcagtcggaggagctcgaacaatgtcagcag
gaactgaaagtgtctctgcagaacctcggcctgtcgctcatcaacaacggcaaccggcag
gagatcgcgtacatcggcatcaccagctccggcgtggtttgggagtttaagccaaagaat
cgctggaagtccttcagtcagaagaacatcaaccagctggagaaggtttaccagagtcag
ctgagtgggaagacggagggaggctgggtcagactggacagcaacctggaggtgaacctc
cgtccagctgtcatgatgatgcggcaaccccattcgtgccctgtgaggaggaacttcctg
tctgggatccaggtggagttcaagaggtcactgcaccagcgcagcctgagagcccaactg
cactggctgcaggtggacaaccagttgcccggtgcggttttccccatcatcttccatcca
gtccctccaccaaagtccatcgctctggactcagagccgaaacccttcatcgatgtgtct
gtcatcacaaggttcaaccagcacagcaacgtcacccagattaagtacttcatggctcta
gttcaggagatggcgttgaagatcgaccaaggtttccttgatgctgttgcagctctgttc
agcccagctgctaacctgcagaatgataggaagaagtcgggactcatcgaaggagatctg
aagcgccttcaggccgagccgaccgacgcctctctgtccgacgtgtcgggactcagcttc
ttcgagcattttcacatctcacctgtcaagctccacctcagtctgtctctgggctccagt
gatggtgactctgtccaggagaaccccattactcagtccctgaacctggtgctgaagagc
atcggtgctactctgaccaacgttgacgatatcatcttcaaactggccttctttgaagtg
aggtaccagttctacagcaaagagaatctgatgtgggccgtgggccgacactactctgaa
gagttccttaagcagatgtatgttctggttctcggcctggatgtgctgggtaatccgttc
ggagtgatccgaggcctgtcccaaggcgtggaagccttcttttatgaaccattccaggga
gccgttgagggtccagaggagtttgctgaaggtttggcgatcggggtccgcagccttttt
ggttcaactgttggtggcgctgcaggaatgttctccaagatcacaggttccatgggtaaa
ggcctggctgccatgaccatggacaaggagttccagcaggagcgccgggaggacatgaac
cggccagcgaaggacttcaaagacagtctggccaaaggaggaaaaggactgctgaagggc
gttgttggtggggttactggcattgtcaccaaaccagtggaaggggccaagaaggagggc
gcggccggtttctttaagggcatcgggaagggcctggtgggcgtggtggcgcggcccacc
ggcggcatcgtggacatggccagcagcaccttgcagggcatccagagaggccccaccaga
gcggccgaggcgacagaggaggtgaccaaactccggccggcccgtctgatccgggaggac
gggatcatccgaccttatgacctgacggagtcgcagggtttcgacctctaccagaggatc
aaacatctggacggtgaagtgttcagaagctgcagtccgaccccgggccacaggaagtcc
aacatcatcatcaccaacaggcgcgtcttctgtgtgaaggagatcgatttgctgggtcac
ctcactactgactgggaatgctggtttgagaacttccaccgtcctccggcggtttccgga
tcagagctcaggatttactgcaaggagatccataaactgatgcttcctaaaaaccaggag
cccgtcagaacgatccggttcaaagacccaaattctgcccagaagctgcatgaagccatc
tgggacgctcaggacgcccagaagcagcaccacatggtcaggcaaaagtcccagcgcttc
ctgagactcagcaagaagcagtga
DBGET
integrated database retrieval system
