Poecilia mexicana (shortfin molly): 106910531
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Entry
106910531 CDS
T08022
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106910531 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106910531 (patl1)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106910531 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
106910531 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
106910531
NCBI-ProteinID:
XP_014832672
Ensembl:
ENSPMEG00000006555
LinkDB
All DBs
Position
Unknown
AA seq
736 aa
AA seq
DB search
MFRFQSLDDDCTLEEEDDGLIEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDGL
GAGRGPGDSSPGPASAAGRLPLLGFSSGPPGQDADERSGGGDLAESLARFILDADPAIAG
VGAAERPGSAPGPAGPVLSALRGPDQPRVLQQPASIPPKHQLPPGPPASGLPASSVLSYQ
QQQHLLRRGAAPMGQMNSHSIWDNSMGFGPVSVTPGLVTHMEDSPLMSIIKEVGLPKRPP
QGRSDEGHDLSERAPPPRSSSPVIGSPPVRAVPIGTPPKHLLSLNHQIHHPTAVHVRAPV
QHRFPAPFPERLSPNTLLNLANSPLCRGPFPPRVGPVLSQLQRAQLLNSQVAGFPRGGPG
PPLLAGGGFRPFFGGPPPPHGHRMGPLPPHGPPNHTPPIRHNTTHLHPQHRRMLTQRMQS
RGGDRVRTGLDRRSRDPYSNLMSQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKR
QEKERDSSSRKEHTTKLITPQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTR
SDDEEKREKQVWNKRRQVLYTVEKMYSLLLEVQDFEKRFVQTPEEDRDALMEQHKSNTEQ
LSNSLQDGDWEDRVSDEQCVMIMSVRKGKRLVARLLPFLPAAQAAAVVMVIARNLPALAK
KDKQDQALCCLVEPVSAVIQSLSSSALTDLLQELQGGEGQLAAALQNKVTHRWRTGAASV
SGRKPVGHTWTNQIDG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgacgactgtacgctggaggaagaggacgatgggctg
atcgaggaggaagatgagatcgaccagttcaatgacgacacgtttggagccggcgccatc
gatgacgactggcaggaggagcacaagcggctggcggagctggatgagcgggacgggctg
ggcgccgggcgggggccgggggactcctccccaggccccgcctccgccgcgggtcggctc
cctctgctcggcttctcctctgggccgccgggtcaagacgcagacgagcggtcgggaggc
ggcgacctggccgagtctctggcccgcttcattctggacgccgacccggccatcgccggc
gtcggagcggcagagaggcccggttcggctcccgggccggccggcccggttctgtctgcg
ctgcggggcccggaccagcccagagtcctgcagcagcccgcctccatcccccccaaacac
cagctgccccctggaccccccgcctcaggcctgcccgcctcctccgtgctcagctaccag
cagcagcagcacctcctgcgcagaggagccgctccaatgggccagatgaactctcacagc
atctgggacaacagcatgggcttcgggccggtcagcgtcacgccgggactcgtcacacac
atggaggacagtccactgatgtccatcatcaaggaggtggggcttccgaagcgcccgcct
caggggaggagcgacgaaggtcacgacctgtcagagagggccccgcccccccgctcctcc
tctcctgtgattggctctcctccggtgagggcggtgcctatcgggacgccgcccaaacac
ctgctgagcctgaaccatcagatccaccaccccacggcggtccatgtcagagccccggtc
cagcaccggttccccgctccgttccctgagcgcctgtcccccaatacgctgctcaactta
gccaactctccgttgtgccgcggtccgttccctcccagagtcggcccggttctgtctcag
ctccaacgggctcagctgctcaactcccaggtggcgggttttcctcgcggcggccccggc
cctcccctgctggccggcggcgggttcaggcccttcttcgggggcccccctcctcctcac
ggccacaggatgggccccctgccgccccacggcccccccaaccacacgccgcccatcagg
cacaacacgacgcacctccaccctcagcaccgccgcatgctgacgcagcgcatgcagagc
cgcggcggcgaccgggtcagaaccgggctggaccgccgcagccgggacccgtacagcaac
ctgatgagccagaaggagaaggagtgggtgaccaagatccagatgatgcagctgcagagc
accgacccgtacctggacgactactactaccagaactactatgagaagatggagaagcgt
caggagaaggagcgagacagcagcagcaggaaggagcacaccaccaagctcatcacgccg
caggtggccaaggtggagcacacctaccggccagttcagtttgcaggatctctggggaag
ctgacggtgtccagcgtcaacaacccgaggaagatgatcgacgccgtggtaacgacccgc
tccgacgacgaggagaagagggagaagcaggtgtggaacaagaggcgccaggtgctgtac
accgtggagaagatgtacagtttgctgctggaggtccaggactttgagaaacgcttcgtc
caaacgccagaggaggacagagacgccctgatggagcaacacaagagcaacacggagcaa
ctgagcaactcgctgcaggacggggactgggaggacagggtgagtgatgagcagtgtgtg
atgatcatgtcggtgaggaaagggaagcggctcgtcgccaggctcctccccttcctgcct
gcagcgcaggctgctgccgttgtcatggtgatcgcacgcaacctccctgccttagcaaag
aaggataagcaggaccaggcgttgtgctgcctggtggagccggtctctgcagtcatccag
tctctgtccagctccgccctcactgacctgctgcaggagctgcagggcggcgagggccag
ctggccgccgcgctgcagaacaaggtaacgcatcgatggaggacgggggcggcttctgtt
agtgggaggaaacccgttggccacacctggaccaatcagatcgatggatga
DBGET
integrated database retrieval system
