Poecilia mexicana (shortfin molly): 106911035
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Entry
106911035 CDS
T08022
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106911035 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmei03041
]
106911035 (ddx46)
Enzymes [BR:
pmei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106911035 (ddx46)
Spliceosome [BR:
pmei03041
]
Complex A
U2 snRNP components
U2 related factors
106911035 (ddx46)
Complex B
106911035 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
106911035
NCBI-ProteinID:
XP_014833254
Ensembl:
ENSPMEG00000013401
LinkDB
All DBs
Position
Unknown
AA seq
1069 aa
AA seq
DB search
MGRESRHYRKRSTSRGRSGTRSKSRSPDNKRSKKDDRDRSRRDRSRSRDRRRSRSRDRKR
TRRSRSRDRRRSRSRERKRSRSRSRTRRSRTGSPAKSKKSDEKAKSKEKEKESVDPVSEK
KKVKEEKEDEKVEDVSSKQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELE
EMKQGKKWSLEDDDDDDEEGPALMEVDEDEEEGEGKEEGKEKDAEEVKKEEGEAEKEAPM
EQQVEEDEVDPLDAYMEEVKQEVKKFNIGAMKGNDKKGATTVTKVVTVVKTKKQPMTHKK
KGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHTKIQYESYRKNFYVEVP
ELAKMTTEEVNAYRLELEGITVKGKGCPKPIRTWVQCGVSMKILNSLKKHAYEKPTPIQA
QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEEGEGPISVIMTPTRELALQ
ITKECKKFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNL
RRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPLE
VQVGGRSVVCSDVEQHVLVIDEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLM
KASYPCLSLHGGIDQYDRDSIINDFKTGVCRLMVATSVAARGLDVKQLILVVNYSCPNHY
EDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDILKALELSGSAVPPELEQLWASFKDQQ
KAEGKVIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESM
FNSKKRVKDLSAPGAATGPAGAVTAAAAAPGGPAGLMPGSAGNNQKLEMAKRLALKINAQ
KNLGAEAQDVMQQATNAILRGDPIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQA
AEQAETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEG
ERKIYLAIESASELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtccagacactacaggaagcgctcaacgtcccgcggccggtcgggcacc
cggtccaagagtcgctccccggacaacaagcgctcaaagaaagacgaccgagaccgaagc
aggagggatcggtccaggagcagagaccgcaggaggtcccggtccagagacaggaaaaga
acccggcggtcccgcagcagagaccggaggaggtccagaagccgggagaggaagagatca
cgcagtcggagtcgaactcgcaggtcccgaaccggcagcccggcaaagagcaagaagtca
gatgaaaaagccaagagcaaagaaaaggaaaaggagagcgtcgacccagtttccgagaag
aagaaggtgaaagaggagaaggaagatgagaaggtggaggacgtaagttcaaaacaagat
tttgaccaaaacaaactggaggaagaaatgaggaagaggaaggagcgtgtggagaaatgg
agagaggagcagaggaagaaggcgattgaaaacattggagagataaagaaagaactggag
gaaatgaaacagggcaagaaatggagcctggaggacgacgacgatgacgatgaggagggt
cctgctctgatggaagtggatgaagatgaagaggagggggaaggaaaggaggagggaaaa
gagaaggatgcagaggaagtgaagaaggaggagggcgaggctgagaaggaggcgccgatg
gagcagcaggtggaggaggacgaggtggatcctctggacgcctacatggaggaggtcaaa
caggaagtgaagaagttcaacatcggagccatgaaggggaacgataagaaaggagcaacg
acagtaaccaaagtggtgacggtggtgaagaccaagaaacaaccgatgacgcacaagaag
aagggcgagctgatggagaacgaccaggacgccatggagtactcatcggaggaagaggag
gtggacctgcagacggctctgacgggtttccagaccaagcagaggaaagttctggagccg
gtcgaccacaccaagatccagtacgagtcgtaccgcaagaacttctacgtggaagttcct
gagctggccaagatgaccacagaggaagtgaacgcctacaggctggagctggaaggcatc
accgtcaaaggcaaaggttgtcccaaacccatcaggacctgggtgcagtgcggcgtgtcg
atgaagatcctcaactccctgaagaaacacgcgtatgagaagccgacgccgatccaggcc
caggccatccccgccatcatgtccggcagagacctgatcggcatcgccaagaccggcagc
gggaagaccatcgccttcctgctgcccatgttccgccacatcatggaccagcgccccctg
gaggagggagaggggccaatctctgtaatcatgactcccaccagagagctggctctgcag
atcaccaaggagtgtaagaagttctccaaaccgctggggctgcgagtggtgtgtgtttac
ggagggacgggaatcagcgaacagattgcggagctgaagcgcggagcagagatcatcgtt
tgcactccagggaggatgattgacatgctgggcgctaacagcggtcgggtcaccaacctg
cggagggtcacgtacgtggtgctggacgaagcagacaggatgtttgacatgggctttgag
ccacaggtgatgcgtatcgtggacaacgttcgtcccgaccgacagacggtcatgttctcc
gccaccttccccagagccatggaggcgctggcccgcaggatcctggccaagcccctcgag
gtgcaggtcggaggtcgcagcgtggtctgctcagatgtggagcagcacgtgctggtgatt
gatgaggaaaagaagttcctgaagctgctggagatcttgggtcactaccaggagaaaggc
tcagtcatcatctttgtggacaaacaggagcatgcagacggcctgctgaaggacctgatg
aaagcctcctacccctgcctgtctctacatggaggcatcgaccagtacgaccgagacagc
atcatcaacgactttaagacgggagtgtgtcgcctgatggtggccacctcagtggcggcc
agaggcttggacgtcaagcagctcatcctggtggtcaactacagctgccccaaccactac
gaggactacgtccacagggcggggcgcaccggcagggcgggcaacaagggctacgcgtac
accttcatcacagaggaccaggctcgctacgctggcgacatcctaaaggccttggagctg
tcgggctccgccgttcctccagaactggagcagctgtgggcttccttcaaggaccagcag
aaggcggagggtaaggtgattaagagcagcagtggcttctcagggaaaggctttaagttc
gatgagacggagcatgctctggccaacgagaggaagaagctgcagaaagctgcgctggga
ctgcaggactctgacgatgaggacggcgccttggatatcgaggagcaaatagaaagcatg
ttcaactctaagaagcgggtgaaggacctgtcagctcccggcgcggccaccggtcccgcc
ggcgccgtcacggctgcagcggcggcccctgggggcccggcgggcctcatgcccgggtcc
gctggaaacaaccagaagctggagatggccaaaaggctggcgctcaagatcaacgctcag
aagaacctgggcgccgaggctcaggacgtgatgcagcaggccaccaacgccatcctgcgc
ggcgaccccatcatgaccccgtcggtgtcggccaagacgatcgcggagcagctggcggag
aagatcaacgccaagctgaactacacgccggtggagaagctggaggaggagcggcaggcg
gccgaacaggccgaaaccgtcaagagatacgaggaggagctggagatcaacgacttccct
cagacggcccggtggaaggtgacgtctaaagaggctttgcagaggattggagaatactct
gaggcggccatcaccatcagaggaacgtatttccctccaggcaaagagccgaaggaggga
gagcgaaagatttatctggctattgagagtgcgagtgaactggctgtgcagaaagccaaa
acggagattacacggctaataaaggaagagctcatcagattacaaaattcctaccagcca
acaagcaaaggccggtacaaggtgctgtag
DBGET
integrated database retrieval system
