Poecilia mexicana (shortfin molly): 106911582
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Entry
106911582 CDS
T08022
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106911582
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GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106911582
NCBI-ProteinID:
XP_014833873
LinkDB
All DBs
Position
Unknown
AA seq
1194 aa
AA seq
DB search
MDELTRQMEISGEKVLTETVTSTTRLTSLPPKGTSGSNHRNMSSGAGGLGFEKNVLTQNS
SGTYFSSSSIGVTSNYSSSSGIYLGGDSSGGGEGGGSYIDGEGYGSGGGGGGGRGGSSGS
TYLVSSVSKVRSSSSGGARRAQTGGTSVGLSPGFRERKTIASRSGGYDGSSSGNSSPEFS
RKDYGNYCSGATRGRSESRESEIRARLQSASPSAGRWAELEDVKKLLKGRSSSVSPTRSS
ASVTLPVPKKASVETKTVSVATQSASTLFEPVAQMNGFNTIDVSGLYDSRLTSRQRDSGV
QTGQHTVTVKSCHCDAGVKSSQYDVSLSSGQYDAGLKSSQYDVCLSSGQYDTGLKSGRYD
MSLKSGQYDTAGRSGQYDTLDSAFPTFSWSTSTLPSSSSTTVVAGNTSSYTYQLGQVSAN
NRSGGSPPLSPVPQQSLSVYGFQNNLAPTSIGVLTTSGGNVTTNLGGYGVQKNVSNGSAV
ISSGISTATRSQTDDVYKRDYRYMASEKENVPARREGEMLILAKDSGKQFTTTTSSTHIA
GGSLSGDSIKKEKLISSYVDTGTLKAETGNSYYGSSGVLMKDKATYAEIRRDSGIFGGGG
LCCCSDSCCSWWKWLLGLLLLCLLLLGLLFGLIALAEDVRKLKKRVSTLETEVSVANART
SRLSGSSNDINTYVSGGGGGGGTGTDNTLVHGFGGAGGGGSSDSKTQIIIAGAGAGAGGS
ASRNDADVGVVGAGGAGGAVGAGTSSSSSSGTSFSGSAGSAGTSFSDGVSAGGASFGGGG
GTGSSGTSFGGGTGSSGTGFGGGTGSSGTGFGGGTGSSGTGFVIGTGVGTSGGVGGGTAV
SGRYIDSTFLQMAIHQMLRSEMQSQAFRGFLASSVQGERGLPGPKGDSGLKGEPGFPGIP
GTPGPMGHAGPEGPKGQKGSQGEHGVEGPPGIRGREGPPGPRGDPGPAGFGLKGDKGEAG
SVGPAGAPGPKGAQGIQGLHGSPGPQGFRGEAGLPGPKGDRGLAGFQGLKGETGEKGVRG
LQGEPGLPGPAGEKGSKGSMGLSGQDGEKGSRGDQGPPGPPGLRGSAGPPGDAGLPGTPG
LQGPPGIPGNPGRPGAKGEPGQAGRIINAAGSTSVGIPGPPGPAGPPGPAGPPGLSGPIG
PAGLPGPPGPKGDRGYKGEQGETGTTRETIYSSTAESESFLIFLQMNFQFNLTQ
NT seq
3583 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaaggcagatggagatctcgggagaaaaggttctgacagaaaccgta
acctccaccacccgactgacttctctcccaccaaagggaaccagcggatcaaatcacagg
aatatgtccagcggtgccggagggctgggttttgagaagaatgtcttaacgcagaacagc
agtggaacctacttctcctcatcctctataggagtgacgagtaactacagctcctcctca
ggaatctacctgggaggagattcctctggaggaggtgaaggtggcggaagctacatcgat
ggagagggctatgggagcggaggaggaggaggaggagggagaggaggaagcagtggaagc
acttatctcgtgagctccgtgtcaaaggttcggtccagctcgtcgggcggtgccaggaga
gctcagactggagggacatcagtggggctgtcgccaggtttccgagagaggaagaccata
gccagccgctcgggaggctacgacgggagctccagtggtaattcctccccagaattttca
cgcaaagactatgggaactactgctccggcgccacaagagggaggagtgaaagcagagag
agcgagatcagagccagattacaaagtgcctccccatctgccggaagatgggcagagttg
gaagatgtgaagaagctgctgaagggacgctccagcagcgtcagtccgacccgctcctcc
gcctcagtcaccctgccagtacctaaaaaagccagcgtggagaccaagaccgtctcagtg
gccactcagtcagcttcgactctgtttgagcctgttgctcagatgaatgggttcaacacc
atcgacgtgtcgggcctctacgacagcagactgacatccaggcagcgcgactctggtgtc
caaacaggccaacacactgtcacagtaaagtcatgccactgtgacgctggagtcaaatcc
agccagtatgacgttagcctgagttcaggtcagtacgatgctggtctgaagtcaagccag
tatgacgtttgcctgagctcaggtcagtacgataccggcctgaaatctggacgatatgac
atgagtctgaaatcgggccagtacgacaccgctgggagatcaggccaatacgacaccctg
gattcagcctttcccactttctcctggtccacctccacgctgccctcctcctcctccacg
accgtcgtcgctggcaacaccagcagctacacctaccagctcggtcaggtcagcgccaac
aacaggtcgggaggctccccgccgctcagccccgtcccacagcaatctctgtcagtttat
ggctttcagaataatctggctcccacctctatcggtgtgctcaccaccagtggcggcaac
gtaaccactaacctgggagggtatggcgtccagaagaacgtgtcaaatggcagtgctgtc
ataagctctgggatctctacagccaccaggtcccaaaccgatgacgtctacaagagagac
tacagatatatggcctctgaaaaggagaacgttcctgccaggagggagggagaaatgctc
attctggcaaaagacagtggcaagcagtttaccaccaccaccagcagcactcatatagct
ggaggttcactttcaggagactcaataaagaaggagaagcttatttccagctacgttgac
acgggcactctgaaagcagagacaggcaattcatactacggatcatccggagtcctgatg
aaagacaaggcaacctatgcagagatccgcagagacagcggcatctttgggggaggagga
ctgtgctgctgctccgactcctgctgctcctggtggaagtggctgctgggcttgctgctc
ctctgcctgcttctgctcgggctcctgtttggcctcattgcattggccgaggacgtgagg
aagctcaagaagcgagtgtcgactctggagaccgaggtctcagtcgccaatgctcgcact
agtcggctgtcgggttcttccaatgacatcaacacctatgtgagcggtggaggtggaggg
ggaggcaccggcactgacaacacactagtccacggattcggaggtgcaggtggaggtgga
agctcggactccaaaacgcaaatcattattgctggtgctggtgctggtgcaggcggctct
gccagtcggaatgatgctgatgtcggcgttgtgggtgccggaggtgctggaggggctgtg
ggagctggaactagctccagtagcagctctggtaccagtttcagtgggagcgccggcagt
gctggtaccagtttcagtgacggtgtcagtgcaggtggtgccagtttcggcggcggtggc
ggcaccggcagttccggtaccagttttggcggcggcaccggcagttctggtaccggcttt
ggcggcggcaccggcagttctggtaccggctttggcggcggcaccggcagttctggtacc
ggtttcgtcattggcaccggtgttgggaccagcggtggtgtcggcggtgggaccgcagtg
agtggaagatacatagatagcaccttccttcagatggccatccatcaaatgttgaggtca
gaaatgcagtcacaggcattcagaggcttcctggcatcctcagtgcagggagagagggga
ttacctggacctaaaggggactctggattgaaaggggagcctggtttccctggaattcca
ggcacaccaggtccaatgggacatgctggtcctgagggtcccaaaggacagaaaggaagc
caaggtgagcatggagtggaagggccaccaggtatcaggggtcgcgaaggaccacctggg
cctagaggcgacccaggacctgcaggctttggactcaaaggggataaaggtgaagctgga
tctgttggacctgctggggcccctggaccaaaaggtgcacaaggaatccaagggttacac
gggtcgcctggtcctcagggtttccgtggtgaggcaggactacctggaccaaaaggtgat
agaggacttgctggattccaaggactcaaaggtgaaacaggtgaaaagggagtcagaggt
ctgcaaggggaacctggtttaccaggaccagcaggagagaaaggctccaaaggatccatg
ggactttctggacaagacggtgaaaagggatcaagaggtgaccagggaccgcctggcccg
cctggactcaggggttctgctgggcctcctggagatgccggacttccaggaacaccaggg
cttcaaggaccaccaggaattccaggaaatcccggccgaccaggagccaaaggtgaaccc
ggtcaagctggacgaatcatcaacgcagccggctctacttctgttggcatcccagggcca
cctggacctgctgggcccccgggtcccgctggtcctccgggactatcaggtcccattggc
cctgctggtctgcctggcccacctggtcctaaaggtgacagaggatataagggagagcag
ggagagactgggacaaccagggaaaccatatattcatctacagcagagagtgagtccttt
ttaatcttcctgcagatgaatttccaatttaatctaacgcaga
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