Poecilia mexicana (shortfin molly): 106912322
Help
Entry
106912322 CDS
T08022
Symbol
skiv2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106912322 (skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106912322 (skiv2l2)
03041 Spliceosome [BR:
pmei03041
]
106912322 (skiv2l2)
03009 Ribosome biogenesis [BR:
pmei03009
]
106912322 (skiv2l2)
03016 Transfer RNA biogenesis [BR:
pmei03016
]
106912322 (skiv2l2)
Enzymes [BR:
pmei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106912322 (skiv2l2)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106912322 (skiv2l2)
Spliceosome [BR:
pmei03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106912322 (skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
106912322 (skiv2l2)
Ribosome biogenesis [BR:
pmei03009
]
Eukaryotic type
Pre-60S particles
Helicases
106912322 (skiv2l2)
Transfer RNA biogenesis [BR:
pmei03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106912322 (skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
106912322
NCBI-ProteinID:
XP_014834628
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MADPFGDGLFSVFDDEQQGSAGKKTPTGASTETGKSADKSGADRDAGPSVRVKREADSDG
GEELVFGKKPRHDVVSSSDLNLTEFMPQVKVEQVETVEGCSHEVALPADEEYKPLKPRVG
KAAKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDLGESGGGSGGGKWDRNRK
GGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQVSKLDFNNDDEKRLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KKLEDQYHTIEIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNE
DTDFGWGVVVNFSKKTNTKASGDSEPLYVVEVLLHCSKESVKNSATEAAKPAAPGETGEM
QVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKVIQKVEAFEHRMYTHTLHSDPNLESVYSLCERKAQIAAEVRTAKRELKKARTVL
QMDELKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQAT
ALLSCFVFQENANEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHL
MDVVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENRFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccttttggagacggattgttcagcgtgtttgacgatgaacaacaaggttct
gctggcaaaaagacgcccacgggtgcctctacggagactgggaaatctgcggataaaagc
ggtgctgacagggatgcaggtccgtctgttcgggtcaagagggaggcggacagtgacggc
ggagaggagttggtgtttgggaagaaacctcggcatgatgtagtctcatccagtgaccta
aatctcacagaatttatgcctcaagtgaaggtggagcaggtggaaactgtggaaggatgc
tcacatgaggttgctctgccagctgatgaggagtataaacctctgaaaccaagagtagga
aaagcagctaaggaatacccgtttgtactggatcccttccagcgtgaggctatcctatgt
atcgacaacaaccagtctgtgcttgtgtctgcacacacctctgcaggaaaaactgtctgt
gcagaatatgccatcgctctggctcttagagagaagcagagagtcatcttcaccagtccc
attaaagcactctctaaccagaagtacagagagatgtatgaagaattccaggatgtaggg
ttgatgactggtgatgttaccatcaaccctactgcctcctgccttgtcatgacaacagag
attctaaggagcatgctgtaccggggatctgagatcatgagggaggtagcctgggttatc
tttgacgagatccattacatgagagatgcagagcgtggcgtggtttgggaggaaaccatc
atcctccttcctgataatgtgcattatgtattcctgtctgctaccatcccgaatgccaaa
cagtttgccgagtggatctgtcatttacacaaacagccatgccatgtggtttacacagac
taccggcccactccactgcaacattatatttttccagcagggggcgatggactccaccta
gtggttgatgaaaatggggacttcagagaagataatttcaacacagccatgcaggttctc
agagatcttggggagtccgggggcggcagtggaggtggcaagtgggatcgaaaccgaaag
ggaggcactaagggaccgtccagtgttttcaagatagtgaagatgatcatggagaggaac
ttccagccggtgataattttcagcttcagtaagaaagactgcgaggcctacgccctgcag
gtgtccaagctggattttaacaatgatgatgagaaacgtctggttgaagaagtgttcaac
aatgcagtggactgtctttcagatgaggacaagaagctgcctcaggtcgagcatgtgctg
ccactcttaaagagagggataggaatccatcatggaggactgctgcccatcctgaaagag
acaattgagattctcttctctgagggtctgctcaaggccttgtttgctacagagaccttc
gccatgggtattaacatgcctgctcggaccgttctcttcaccagcgcacgcaagtttgat
ggcaagaaccaccgctttattacatcaggtgagtacatccagatgtcggggcgcgctggc
aggagaggaatggatgacagaggaatagttatttttatggtggatgagaagatgagtcca
gctgtgggcaaacagctactgaagggctcagcagaccctttgaacagtgccttccacctg
acctacaacatggtgctcaacctgctgcgtgtagaagagatcaacccagagtacatgctg
gagaagtccttctaccagtttcagcactacagggctttgcctggcgtcgttgagaaaatt
aagaagttagaggaccagtatcacaccattgagattcctaacgaggagagtgttgttaca
tactttaagatcaggcagcagctggctaagctgggtaaagagatacaagaattcatccac
aagcccaaatactgcctgcccttccttcagccgggccgactcgtgaaggtgaagaatgag
gataccgactttggctggggagtggttgtaaactttagcaagaaaacaaacacaaaggcc
agcggagactctgagccgctgtacgtagtcgaggttttgcttcactgtagtaaagaaagt
gtaaaaaactctgcaactgaggcggccaagcctgctgctccaggggagaccggagagatg
caggtggttccagtgatgctccacctcctcacttcgatcagctcagttcgtctttacatc
cctaaagatctcaggccttttgacaacagacagctcatgctcaagtccatacaggaggtg
cagaagcggttcccggacggcgttcctttactcgaccccatcgatgacatgggcatcaaa
gaccccggcctgaagaaggtcattcagaaggtggaggccttcgaacaccggatgtacaca
cacacactccacagcgatcccaacttagaatccgtctactccctgtgtgagaggaaagca
cagatcgcagctgaggttcggaccgccaaacgggagctgaagaaagctcgcaccgtcctg
cagatggacgagctgaagtgccgaaagagagtcctccgaagactcggcttcgccagcccc
tctgatgtcatcgagatgaaaggcagggtcgcctgtgaaatcagcagcgccgatgagctc
ctgctgacagagatggtgtttaacggcctcttcaacgacctgacggtggaacaagccacc
gctctcctgtcctgcttcgtcttccaggagaacgctaacgagatgccaaagctaaccgag
cagctggccgcgccgctcagacaaatgcaggagtgtgcgaagcgcatcgccaaagtgtcc
gcagacgccaagctggaggttgatgaggagacgtacctaaaccagttcaaacctcacttg
atggatgtggtgttcgcctgggccaacggggccacgttcgctcagatctgtaagatgacg
gacgtctttgaaggaagcatcattcgctgcatgcggcgcctggaggaggtgctgcgacag
atgtgctctgcagccaaagccattggtaacactgaactggagaacaggtttgcagaaggc
atcacaaagattaagagagacatagttttcgctgccagtctctatttatag
DBGET
integrated database retrieval system
