Poecilia mexicana (shortfin molly): 106912357
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Entry
106912357 CDS
T08022
Name
(RefSeq) collagen alpha-4(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei04510
Focal adhesion
pmei04512
ECM-receptor interaction
pmei04518
Integrin signaling
pmei04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106912357
04518 Integrin signaling
106912357
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106912357
09142 Cell motility
04820 Cytoskeleton in muscle cells
106912357
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmei04147
]
106912357
00536 Glycosaminoglycan binding proteins [BR:
pmei00536
]
106912357
Exosome [BR:
pmei04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106912357
Glycosaminoglycan binding proteins [BR:
pmei00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106912357
Hyaluronan
Extracellular matrix or blood plasma proteins
106912357
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
VWA_CoxE
GpA_nuclease
Motif
Other DBs
NCBI-GeneID:
106912357
NCBI-ProteinID:
XP_014834657
Ensembl:
ENSPMEG00000005102
UniProt:
A0A3B3Y7Y5
LinkDB
All DBs
Position
Unknown
AA seq
1744 aa
AA seq
DB search
MEGGRSLLLCLIVAACFHGNAAQTTVCTQEAVADLVFLVDGSWSIGTKNFNQIRQFLYTL
VNSFDVSPDHVRVGLVQYSSMPRTEFQLNTFQDKKKILEYIKSLPYSGGETNTGKGLDFV
LNKHFVESAGSRAAQRVPQIAVVITDGKSQDEVERHAERLRNKGIVLYAIGIKDADADEL
KQIANQPHSQHVHSVSDFSALQGISQNIVQTLCTTVEEAKRQVQQMSQECAVANMADIVF
LVDGSSSIGIPSFQQVRLFLQSVVSGLDIGPDKVRVGLAQYSTNPHKEFLLKEHLDAPSL
MTAIQKFPYRAGGTNTGKAIDFLMSEYFTEEAGSRASQRVPQIAVVITDGDSSDNVTDPA
QRLREQGVIVFAIGVGKANLEELENIANQPSQRFLFTIDSYEALQRLTGGLLQTVCVSME
DQRQALAEKFADIFFLVDGGMTQTQFQQVRTILTRLANQVNFGASAYRLGLAQYSEQVKV
EFLLNQHQTREQIQAAVKSFQYLRLPPAAKRNLGAALTYASTNFFTKEAGSRADQGYRQF
LVVMSGNDSSDHVFFGSRQIQSEAITVVGMSLGASMEELRVVATGEHVYRVNTTTVPLLR
RIFETEEPEKSLTQDCRAAKLADIVFIVDESGSITVQNFQLVRSFLYSIISGLEIDPNRV
RVGIVLYNEHPTAQVYLNTFKQKTELLNFVKILPYRGGGTNTGAALNFTRENVFITEKGS
RKDKGVEQVAVVITDGESQDNVSQAAAELRRAGVTVYSVGVQNANEEELRQIASHPPQKH
VFMVDSFARLKSLEQYLQKTLCYNIIRQAVSVSARRSGIREGCVQTDEADIFFLIDHSGS
IYPSDFQDMKKFILEFINIFRIGPQHIRIGVAKYADLPELEFDLTTHSDQETLKKAVEEI
GQVGGGTKTGKALEFMGPLFKRATVTRGHKVPEYLVVITDGESADEVKAPAEALRAQGVI
TYAIGVKDAVVRELEEISGNPKRMFFVNNFDALNPIKDDIITDICTTDVCKDVPGDLLFL
IDSSGSIHPDDYNKMKDFMKSVISTSFVGRNKVHVGVMQFSSSQKPEFSLIEHFTKNDMI
VAIDGMTQMGGGTNTGAAISAVSQLFDPASGGRPDLPQRLVVITDGEAQDDVKAPAEALR
AKRVVVYAIGVMEANTTQLLEISGSAERMYAERDFDALKDLERQLSLDLCDPERDCKKTE
QADIIFLVDGSTSITLDKFRSMQKFMQSMVNQTMVGKDLTRFGVILYSTFPKSVFTLSQY
SSRQEVFKAITALRSSLGDTYTGRALTYSLQFFGAEHGGRAALKVPQILMVITDGDATDR
YSLVEPSAALRNAGVNVFSIGVEGANVTQLEIMAGNDQSKVFYVDNFKALETLYKNISQV
LCNSTKPVCEKQQADLVFLVDQSGSISSNDYSIMKNFTTQLVNSFKVGEDLVRVGLAQFS
SSFQHEFYLNRFYQETEVSAHIFNMRHKGGGTNIGLALDSIREYFEASRGSRRSSGISQN
LVLITDGDSQDEVEQPADRLRALGIEMFAIGVGDVHDLQLLQITKDPRKMFTVQNFGSLD
AIKQKVVDTICKSKPSTDQPDCSIDIAMGFDISRRSGETLVSSQSKLQAFLPEIARYVSS
VPRLCCTNSAITPSLAYRLVARDGRILDDFKFEAYNEDVVRKVMTSSLREPTFFNSALLR
SFEAKFRAESRTGVKVSPRRRVWGNGRGSASEPALEPDPVMIKLQDSQSWTSRQPRQVYS
FKLK
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atggaggggggccggagtctgctgttgtgcctcatcgtggcagcgtgtttccatggcaac
gccgcccagacgacagtctgcacccaagaggccgtagctgacctggtcttcctggtggac
ggctcatggagcatcggcaccaagaacttcaatcagatccgtcagtttctctacacgctg
gtcaacagcttcgatgtcagtcccgatcacgttcgggtcggcctggtccagtacagctcc
atgccacgtaccgagttccagctcaacaccttccaggacaagaagaagatcctggagtac
atcaagagcctaccgtactcgggaggcgaaaccaacactgggaagggcctggacttcgta
ctgaacaagcactttgtggagtcagctgggagccgcgcggcgcagagagtgccgcagatc
gccgtggtcatcaccgacggcaaatcacaggacgaggtggagcgccatgcggagaggctg
agaaacaaggggattgttctgtacgccatcggcatcaaggacgcagacgcagatgagctg
aagcagatagctaaccagccgcacagtcagcacgtccacagcgtgtcggacttctccgct
ctgcagggcatttcccagaacattgtccagacgctctgcaccacagtggaggaggccaag
agacaagtccagcagatgtctcaagaatgtgccgtagccaacatggccgacatcgtcttt
ctggtcgatggctcttccagcattggcatccccagctttcagcaagttcggttgtttctc
caaagtgttgtctccggtcttgacattggtccagacaaagtccgagttggcctggctcag
tacagcaccaatcctcacaaagagttcctgttgaaggagcatctggacgctccatctctg
atgactgcgatacagaaatttccctaccgggccggaggcacgaataccggcaaggccata
gacttcctgatgtcggagtacttcacggaggaggcaggcagccgagcgagtcagagagtg
cctcagattgccgtggtcatcactgacggagactcgtccgacaacgtgacggacccggcc
cagcgactgcgagaacagggggtcatcgtcttcgccatcggggtgggaaaggccaatctg
gaggagctggagaacatcgctaaccagccgtctcagcgcttcctgttcaccattgacagc
tacgaggccctgcagaggctgacggggggtctgctgcaaaccgtctgtgtctccatggag
gaccaacgacaagctttggcagagaagtttgcagacatcttcttcctggtggatggcggt
atgacacaaactcagttccagcaggtcagaacgatcctcacccgactggccaatcaggtt
aactttggagcatctgcctatcgcctgggcttggcccagtatagtgaacaagtgaaggtg
gagtttctcctcaaccagcatcaaaccagagagcagatccaggctgcagtgaagagcttc
cagtatctccgacttccacctgctgcaaaacgaaacctgggcgccgccttgacctacgcc
agcactaactttttcaccaaggaggcgggaagccgagcagatcaaggctacagacagttc
ctggttgttatgagcgggaatgactccagtgatcatgtgttttttggatcccgtcaaatc
cagtcagaagccatcactgtggtggggatgagcctcggagcgtccatggaggagctgcgc
gtggtcgccactggagagcatgtctaccgggtcaacaccactactgttcctctgctcaga
cgcatctttgagaccgaggaacccgagaagtctctgactcaagattgcagagctgccaaa
ctggccgatatcgtattcatcgtggacgagtcaggaagtatcaccgtccaaaacttccag
ctggtgcgttccttcctgtactcgatcatcagcggcctggaaatcgatccaaacagagtc
cgagtggggatcgtgttgtacaacgagcaccccacagcgcaggtctacctcaacacattc
aagcagaaaaccgaactactgaacttcgtcaaaatcctgccttaccgtggaggtggtacg
aacaccggggctgccctgaacttcacacgggagaacgtcttcatcacagagaaagggagc
aggaaggataaaggtgtggagcaggtggctgtagtgatcaccgatggagagtctcaggac
aacgtgagccaggcagcagctgagcttcggcgtgccggagtcaccgtttactccgtggga
gtccaaaatgccaatgaggaggagctgaggcagatagcctcccaccctccacagaaacac
gtcttcatggtggacagcttcgccagactgaaatcgctggaacagtacctgcagaaaact
ctgtgctacaacatcatccgccaggcggtgtcagtcagcgcaaggagatccggcatcaga
gaaggctgcgtccaaacagatgaagctgacatcttcttcctcatcgaccactcaggaagt
atttacccgtctgattttcaagacatgaagaagttcatccttgagtttatcaacattttc
cgtattggaccacaacatatccgcataggagtcgcaaaatatgcagatttgccagaactg
gaatttgatctgacgacccattcggatcaggagacgctgaagaaagcagtggaggagatc
ggacaggtgggaggcggcacaaagactgggaaagctctggagttcatgggtccgctcttt
aaaagagccacggtgacccgcggtcacaaagttcctgagtacctggtggtcatcactgat
ggagagtctgcagatgaggtcaaggctcctgcagaggctctgagggcgcagggcgtgatc
acctacgccatcggggtgaaggacgctgttgtgagagaactggaagagatttctggcaac
ccaaagaggatgttcttcgttaacaattttgatgctctcaatccaatcaaggacgatatt
atcactgacatctgtaccacagatgtttgtaaagatgtaccaggtgacctgctgttcctc
atcgacagctctggaagtatccacccagacgactacaacaaaatgaaggacttcatgaaa
tctgtcatcagcacatcttttgttggcaggaataaggttcatgtcggtgtgatgcagttc
agcagcagccagaagcccgagttctccctcattgagcactttaccaaaaatgacatgata
gtggccattgacggcatgacacagatgggcggaggaacgaacaccggcgcagccatctca
gcggtgtcccagctcttcgatccagccagcggaggacgcccagacctgccgcagaggctg
gtggtgattactgatggcgaggctcaagacgacgtcaaagctcctgctgaggcgctgaga
gccaagagggttgtggtctacgccattggagtgatggaggccaacaccacccagctgctt
gagatcagcggctctgcagagaggatgtacgctgagagggacttcgatgctctgaaggat
ctggagagacagctgtccctggatctgtgtgatccagagagagactgcaagaagacggaa
caggcagacatcatcttcctggtggacggctccaccagcatcaccctggacaagttcaga
agcatgcagaagttcatgcagtccatggtgaaccaaaccatggtgggcaaagacctgact
cgctttggcgtcatcctctactccaccttccccaagtctgtcttcactctgagtcagtac
agctccagacaagaggtttttaaggccataacagccctgaggtcctcgctgggagacacc
tacactggacgggccctgacgtattcgttgcagttcttcggtgctgagcatgggggccgg
gcggcgctgaaggtgcctcagatcctcatggtgatcacggacggagacgctaccgaccgc
tacagcctggttgagccgtctgcggcgctcaggaacgcaggagtcaacgtgttcagtatc
ggggtggaaggagccaacgtgacccagctggagatcatggctggtaacgatcagtccaag
gttttctacgtggacaatttcaaagccctggaaaccctctacaagaacatcagccaggtg
ctctgcaactccaccaagccagtttgtgagaagcagcaggctgacctggttttcctcgtc
gaccagtctggcagcatcagctccaacgattactccatcatgaagaacttcaccactcaa
ctggtgaacagctttaaagtcggtgaggatttggttcgcgttggactcgcccagttcagt
agcagctttcagcatgagttttacctcaaccggttctaccaggagacggaggtatctgcc
cacatcttcaacatgaggcataagggtggaggcaccaacattggactggctctggactcc
atcagggaatatttcgaagcttctcggggcagccggagatcttcaggaatctcacagaat
ctggtcctgatcacggacggagattcacaggatgaggtggagcagccggccgatcgtctc
agagccctggggattgagatgttcgccatcggcgttggcgacgtccacgacctgcagctg
ctgcagatcaccaaagaccccaggaagatgttcacagtgcagaactttggcagcctggat
gcaatcaaacagaaggtagtggacaccatctgcaagtccaaaccttcaacagaccagcct
gactgctccatcgacatcgccatgggtttcgatatctctcggcgaagcggcgagactttg
gtgagcagccagagcaaactccaggccttcctgcctgagatcgcccgctacgtttcctca
gtgccacgcctgtgctgcaccaacagcgccatcactcccagcctggcctaccgcctggtg
gccagggacggccgcatcctggacgacttcaaatttgaggcctacaacgaggacgtggtg
aggaaggtcatgacctccagtctgagggagcccacgttcttcaactcggccctgctgcgg
tccttcgaggcgaagttcagggccgagtccagaaccggcgtgaaggtgagtccgaggcgg
cgcgtttggggaaacggacgcggttctgcttcagaaccagcgttggaaccagatcctgtg
atgataaaacttcaggacagtcaaagctggacatccaggcagccaaggcaggtttattca
ttcaaactgaagtga
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integrated database retrieval system
