Poecilia mexicana (shortfin molly): 106914122
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Entry
106914122 CDS
T08022
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106914122
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106914122
NCBI-ProteinID:
XP_014836203
LinkDB
All DBs
Position
Unknown
AA seq
1848 aa
AA seq
DB search
MDELTRQMEISGEKVLTETVTSTTRLTSLPPKGTSGSNHRNMSSGAGGLGFEKNVLTQNS
SGTYFSSSSIGVTSNYSSSSGIYLGGDSSGGGEGGGSYIDGEGYGSGGGGGGGRGGSSGS
TYLVSSVSKVRSSSSGGARRAQTGGTSVGLSPGFRERKTIASRSGGYDGSSSGNSSPEFS
RKDYGNYCSGATRGRSESRESEIRARLQSASPSAGRWAELEDVKKLLKGRSSSVSPTRSS
ASVTLPVPKKASVETKTVSVATQSASTLFEPVAQMNGFNTIDVSGLYDSRLTSRQRDSGV
QTGQHTVTVKSCHCDAGVKSSQYDVSLSSGQYDAGLKSSQYDVCLSSGQYDTGLKSGRYD
MSLKSGQYDTAGRSGQYDTLDSAFPTFSWSTSTLPSSSSTTVVAGNTSSYTYQLGQVSAN
NRSGGSPPLSPVPQQSLSVYGFQNNLAPTSIGVLTTSGGNVTTNLGGYGVQKNVSNGSAV
ISSGISTATRSQTDDVYKRDYRYMASEKENVPARREGEMLILAKDSGKQFTTTTSSTHIA
GGSLSGDSIKKEKLISSYVDTGTLKAETGNSYYGSSGVLMKDKATYAEIRRDSGIFGGGG
LCCCSDSCCSWWKWLLGLLLLCLLLLGLLFGLIALAEDVRKLKKRVSTLETEVSVANART
SRLSGSSNDINTYVSGGGGGGGTGTDNTLVHGFGGAGGGGSSDSKTQIIIAGAGAGAGGS
ASRNDADVGVVGAGGAGGAVGAGTSSSSSSGTSFSGSAGSAGTNLSGGAGSAGTSFSDGV
SAGGASFGGGGGTGSSGTSFGGGTGSSGTGFGGGTGSSGTGFGGGTGSSGTGFVIGTGVG
TSGGVGGGTAVSGRYIDSTFLQMAIHQMLRSEMQSQAFRGFLASSVQGERGLPGPKGDSG
LKGEPGFPGIPGTPGPMGHAGPEGPKGQKGSQGEHGVEGPPGIRGREGPPGPRGDPGPAG
FGLKGDKGEAGSVGPAGAPGPKGAQGIQGLHGSPGPQGFRGEAGLPGPKGDRGLAGFQGL
KGETGEKGVRGLQGEPGLPGPAGEKGSKGSMGLSGQDGEKGSRGDQGPPGPPGLRGSAGP
PGDAGLPGTPGLQGPPGIPGNPGRPGAKGEPGQAGRIINAAGSTSVGIPGPPGPAGPPGP
AGPPGLSGPIGPAGLPGPPGPKGDRGYKGEQGETGTTRETIYSSTAERQFGAGGSSSFHG
IPGPPGPPGPPGRPGDSRQGPPGPPGPPGYGIPGPKGEKGDVGFTSSSGTYYSGPPGPPG
QPGPKGATGSPGPRGYTGEQGPPGVPGTPGRAGSSVAYGGNAVPGPPGPPGPPGLPGLPG
VKGDTGAPGIPGTSRGSVSVTSGPAGPPGPPGPPGLPGSFASSTEMRQYISDYLSRYRLS
SLPGPPGPPGPPGLPGTFSGSIDDISTRIIAYLRRSDSGFSIGVQGPPGPPGPPGPASGS
LTVSALIAMLQRDDVRRYLSGPPGPQGPPGPPGASGGLSGTYRIEEVATYVFNIMNERGI
ARGPPGPRGLPGPPGAPGAGGSGFTTATIDYSALIRNSDFRSWITSAVQQGPPGPPGVPG
LPGPPGPQGPPGVSTATVYGSGSRGYSLEEIQRYLQGSGFRGLPGPPGPPGPQGPPGAVT
GSVTYSGNFPRESIRAEIQQYLSSDSVRRTIVGPPGPQGPKGQKGDRGEPGYSQSYIQSQ
SYQQQSDDRYGSQRRDVDVSRLTETLDYSSVAMKVTDYIKNQGLLQQYISDGSWRTNVRA
IQGPPGPPGPPGPPGHSRVIGSYGNVTADLMDFFRRHGTVPGPPGSPGLKGDRGYPGPKG
DKGDPGPPGLPGIPAPLTVQIPHKVQKREAGDKVAVRRKRRRSQAGFG
NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaaggcagatggagatctcgggagaaaaggttctgacagaaaccgta
acctccaccacccgactgacttctctcccaccaaagggaaccagcggatcaaatcacagg
aatatgtccagcggtgccggagggctgggttttgagaagaatgtcttaacgcagaacagc
agtggaacctacttctcctcatcctctataggagtgacgagtaactacagctcctcctca
ggaatctacctgggaggagattcctctggaggaggtgaaggtggcggaagctacatcgat
ggagagggctatgggagcggaggaggaggaggaggagggagaggaggaagcagtggaagc
acttatctcgtgagctccgtgtcaaaggttcggtccagctcgtcgggcggtgccaggaga
gctcagactggagggacatcagtggggctgtcgccaggtttccgagagaggaagaccata
gccagccgctcgggaggctacgacgggagctccagtggtaattcctccccagaattttca
cgcaaagactatgggaactactgctccggcgccacaagagggaggagtgaaagcagagag
agcgagatcagagccagattacaaagtgcctccccatctgccggaagatgggcagagttg
gaagatgtgaagaagctgctgaagggacgctccagcagcgtcagtccgacccgctcctcc
gcctcagtcaccctgccagtacctaaaaaagccagcgtggagaccaagaccgtctcagtg
gccactcagtcagcttcgactctgtttgagcctgttgctcagatgaatgggttcaacacc
atcgacgtgtcgggcctctacgacagcagactgacatccaggcagcgcgactctggtgtc
caaacaggccaacacactgtcacagtaaagtcatgccactgtgacgctggagtcaaatcc
agccagtatgacgttagcctgagttcaggtcagtacgatgctggtctgaagtcaagccag
tatgacgtttgcctgagctcaggtcagtacgataccggcctgaaatctggacgatatgac
atgagtctgaaatcgggccagtacgacaccgctgggagatcaggccaatacgacaccctg
gattcagcctttcccactttctcctggtccacctccacgctgccctcctcctcctccacg
accgtcgtcgctggcaacaccagcagctacacctaccagctcggtcaggtcagcgccaac
aacaggtcgggaggctccccgccgctcagccccgtcccacagcaatctctgtcagtttat
ggctttcagaataatctggctcccacctctatcggtgtgctcaccaccagtggcggcaac
gtaaccactaacctgggagggtatggcgtccagaagaacgtgtcaaatggcagtgctgtc
ataagctctgggatctctacagccaccaggtcccaaaccgatgacgtctacaagagagac
tacagatatatggcctctgaaaaggagaacgttcctgccaggagggagggagaaatgctc
attctggcaaaagacagtggcaagcagtttaccaccaccaccagcagcactcatatagct
ggaggttcactttcaggagactcaataaagaaggagaagcttatttccagctacgttgac
acgggcactctgaaagcagagacaggcaattcatactacggatcatccggagtcctgatg
aaagacaaggcaacctatgcagagatccgcagagacagcggcatctttgggggaggagga
ctgtgctgctgctccgactcctgctgctcctggtggaagtggctgctgggcttgctgctc
ctctgcctgcttctgctcgggctcctgtttggcctcattgcattggccgaggacgtgagg
aagctcaagaagcgagtgtcgactctggagaccgaggtctcagtcgccaatgctcgcact
agtcggctgtcgggttcttccaatgacatcaacacctatgtgagcggtggaggtggaggg
ggaggcaccggcactgacaacacactagtccacggattcggaggtgcaggtggaggtgga
agctcggactccaaaacgcaaatcattattgctggtgctggtgctggtgcaggcggctct
gccagtcggaatgatgctgatgtcggcgttgtgggtgccggaggtgctggaggggctgtg
ggagctggaactagctccagtagcagctctggtaccagtttcagtgggagcgccggcagt
gctggtaccaacttgagcggcggtgctgggagtgctggtaccagtttcagtgacggtgtc
agtgcaggtggtgccagtttcggcggcggtggcggcaccggcagttccggtaccagtttt
ggcggcggcaccggcagttctggtaccggctttggcggcggcaccggcagttctggtacc
ggctttggcggcggcaccggcagttctggtaccggtttcgtcattggcaccggtgttggg
accagcggtggtgtcggcggtgggaccgcagtgagtggaagatacatagatagcaccttc
cttcagatggccatccatcaaatgttgaggtcagaaatgcagtcacaggcattcagaggc
ttcctggcatcctcagtgcagggagagaggggattacctggacctaaaggggactctgga
ttgaaaggggagcctggtttccctggaattccaggcacaccaggtccaatgggacatgct
ggtcctgagggtcccaaaggacagaaaggaagccaaggtgagcatggagtggaagggcca
ccaggtatcaggggtcgcgaaggaccacctgggcctagaggcgacccaggacctgcaggc
tttggactcaaaggggataaaggtgaagctggatctgttggacctgctggggcccctgga
ccaaaaggtgcacaaggaatccaagggttacacgggtcgcctggtcctcagggtttccgt
ggtgaggcaggactacctggaccaaaaggtgatagaggacttgctggattccaaggactc
aaaggtgaaacaggtgaaaagggagtcagaggtctgcaaggggaacctggtttaccagga
ccagcaggagagaaaggctccaaaggatccatgggactttctggacaagacggtgaaaag
ggatcaagaggtgaccagggaccgcctggcccgcctggactcaggggttctgctgggcct
cctggagatgccggacttccaggaacaccagggcttcaaggaccaccaggaattccagga
aatcccggccgaccaggagccaaaggtgaacccggtcaagctggacgaatcatcaacgca
gccggctctacttctgttggcatcccagggccacctggacctgctgggcccccgggtccc
gctggtcctccgggactatcaggtcccattggccctgctggtctgcctggcccacctggt
cctaaaggtgacagaggatataagggagagcagggagagactgggacaaccagggaaacc
atatattcatctacagcagagaggcagtttggtgctggaggaagctcctctttccatggc
atacctgggccaccaggtccacctgggcctcccggacgtccaggcgactcgagacaagga
cctccaggaccaccagggcctccaggttatgggataccaggacctaaaggagaaaaggga
gatgtgggtttcacatccagctcaggaacatattattctggaccgccaggacctcctgga
cagcctggacctaaaggagcaacaggctctcctggaccccgcggatacacaggtgagcaa
ggcccaccgggcgtgcctgggacaccaggaagagcaggaagctccgttgcgtatggagga
aacgcggttcctggaccaccgggtccaccggggcctcctggtctcccagggttacctgga
gtgaagggagacactggagctccaggaattccaggcacatcaagaggttcagtctcagtc
acctcgggccctgctgggcccccgggacccccaggacctcccggcctcccgggttccttc
gcttcctccaccgagatgcggcagtacatttcagactacctgagtagatacagactgagc
agtctacctggccctccaggtccacccgggcctccaggactcccaggaaccttctcaggg
tctatagacgacatctctactcgcatcattgcatacctgcgacgttcagactcaggcttc
agcatcggcgttcagggacctccaggaccgcctggtcctcctgggcccgcctctggctcc
ctgactgtcagcgctctcatcgccatgcttcagagagatgacgtgagaagatatttgtct
ggaccacctgggcctcaaggacctcccggacccccaggggcctcaggaggactctccggc
acttatagaatagaggaggtagccacatatgtcttcaatatcatgaacgagagggggatt
gcgagaggcccgccaggtccacgaggtctaccgggcccccctggagccccaggcgcagga
ggctctggcttcaccaccgctaccatcgactactcggctctgatccgaaattcagatttc
cgctcctggatcacttccgctgtgcagcaaggtcctcctggtcctccaggtgtcccaggg
ctgcctgggcctcctggtcctcaggggcccccaggggtctctacggcgacggtgtacgga
tcgggaagtcgtggctacagcttggaggaaattcagcgctacctgcagggttctggattc
agaggtctccctggacccccaggccccccaggtccccaggggccaccgggcgctgtcacc
ggatcagtgacctacagtggaaatttccctcgggagagcatccgcgctgaaattcaacag
tatctgtctagcgacagcgttcgacgtaccattgtcgggcctccaggtcctcaaggtccg
aagggtcagaagggagatcgcggagagcctggctactcccagagctacattcagagccag
agctaccaacaacagagcgacgatcgctacggctcccagcgcagagacgtcgatgtcagc
aggctcaccgagacgctcgactactccagcgtcgccatgaaagttacagactacattaag
aatcaaggcctgctgcagcagtacatctccgacggttcatggaggacaaacgtccgtgca
attcaaggacccccaggtcctccgggccctccaggaccgcccggccacagccgtgtgatt
ggctcctacggcaacgtcacagctgacctcatggacttcttcaggagacacggcaccgtt
cccggcccgccaggaagcccaggtctaaagggagacagagggtacccaggacccaaagga
gacaagggtgatccgggacctccaggtttacctggaatcccagcgcccctcaccgttcag
attccacacaaagtgcaaaagagagaagcaggcgataaagtggcggttcgtcgaaagcgt
cgtcgatctcaagccggcttcggctga
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integrated database retrieval system
