Poecilia mexicana (shortfin molly): 106914229
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Entry
106914229 CDS
T08022
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03030
DNA replication
pmei03410
Base excision repair
pmei03420
Nucleotide excision repair
pmei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106914229 (rfc1)
03410 Base excision repair
106914229 (rfc1)
03420 Nucleotide excision repair
106914229 (rfc1)
03430 Mismatch repair
106914229 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmei03032
]
106914229 (rfc1)
03400 DNA repair and recombination proteins [BR:
pmei03400
]
106914229 (rfc1)
DNA replication proteins [BR:
pmei03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
106914229 (rfc1)
DNA repair and recombination proteins [BR:
pmei03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
106914229 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_30
RuvB_N
AAA_17
Rad17
AAA_33
AAA_5
AAA_14
AAA_16
BRCT_2
AAA_18
AAA_7
nSTAND3
NTPase_1
RNA_helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
106914229
NCBI-ProteinID:
XP_014836362
Ensembl:
ENSPMEG00000008161
UniProt:
A0A3B3YD28
LinkDB
All DBs
Position
Unknown
AA seq
1167 aa
AA seq
DB search
MDIRRFFGPVSGKPAPNVERKPDEKKKKKSSSEEDLKKRTKEGTKVKSSKNEEEHKSSEK
KRKKRQVIESDSDEEEPVTKAKKSSKEKAATSKAKPPPKKDPVQYVSETDSDSDNFQSLK
KASKSKQNGANKTSEEDSCSPKAKERVKSPAKPPLSRGKTERKSPKVPTTPKLAPPPQPK
QTPTSVLDYFGSGEIHRSDKKLVASTKRKAPTQELDDLISDEELARQLQMEEDMEVEKQV
HEDEEFAKTLAMLDTEPQPKKARKNSEEKPSPTTTPKKSSVSVPSKTSRTPPEDVISPSP
KKSPAAIRASSKLAMMKKRDEAKDEGAKSKAPSSPRKNKTSPKKEPRASSISDMKFTPKA
GTTPTALKTSPKKPESTSTSPDDAEKKKMHTLAFRNYLNRDGPRALGSKEIPEGAENCLE
GCVFVLTGVLESMERDDAKALIERHGGKVTGNVSKKTNYLVQGRDSGASKLDKAESLGTT
ILDEDGLLELIRTKPGKKSKYEIAAEAECKASNTRTPPSRTSKVTPKAQKISPSKGNSRS
PKTPSPSKTGQAHRASGSRTPTGRGSGQTARRELGLASSSSSSSAPGPSPPSPQGDAAGL
LWVDKYRPRSLKAVIGQQGEQSCANKLLRWLQNWHRHHSGGADKPAASRFGKFGGGKDDG
SGYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAESLNNTSIEN
FYRGTSQTVSSRHVLIMDEVDGMAGNEDRGGIQEMIGLIKNSKIPIICMCNDRNHQKIRS
LANYCFDLRFQRPRVEQIKGAMMSLAYKEGIKIPPPALNEIILASNQDVRQVIHNLSMWS
AKDKVMTYDRCKSDAASARKDTKLGPFDVCRKVFASGEETAHMSLIDKSDLFFHDYSLAP
LFVQENYLHVRPAAARGDMKSHLVLLSKTADSIADGDLVDRRIRSSQNWSLLPTQAIFAS
VLPGELMRGYMSQFPVFPSWLGKNSSTNKHSRIVQELTSHMSLKTLSSRQAVNLDYMHYL
RHALLHPLQRHGTEGAAQAVQLLDDYQLLKEDVDSIMEISVWGGQPDPYSKLDPKVKAAF
TRAYNKEVHLTPYSLQTVKKGRRGGGGADLDGGDEGPDDQESGDEAEGLKADAMIKQKKA
KTTKESTKEKKKESGKGKGKGKGKAKK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttggaccggtatcaggcaagcctgccccaaatgtagagcga
aaaccagacgagaagaagaaaaagaagagttcctcagaagaagatttgaaaaagaggacg
aaggaaggcactaaggtcaaaagctccaaaaatgaagaggaacacaaaagcagcgagaag
aaaagaaagaaacgccaagttatagaatcggattcggacgaggaagagccggtgacgaag
gctaagaaatcctccaaagagaaagctgcgaccagcaaagcaaagccgcctcctaagaag
gatcctgtgcagtacgtctctgaaacagactcggacagtgacaatttccagagtctgaag
aaggcctccaagtccaaacagaacggcgctaataaaacgtcagaagaagacagctgcagt
cctaaagccaaagagcgagtcaagtctcctgctaagcctcctttgagtcgggggaaaact
gagagaaagagtcccaaagttcctacaacccctaaactagcccctccccctcagcctaag
caaactcccacctctgtactcgactacttcggcagcggagagattcaccgctcagacaag
aagctggtggccagcaccaagcgaaaggctccgactcaagagttagacgacctgataagc
gacgaggaattggcccggcagctgcagatggaggaggacatggaggtggaaaaacaagtc
catgaggacgaggagtttgccaaaacattggccatgctggacaccgagccacagcccaaa
aaagcgcgcaaaaactctgaggaaaagccaagtccaaccacgacccccaagaagagcagc
gtgagcgtcccgtcgaagaccagtcggacccctccggaggacgtcatcagtccgtcgccc
aagaagagccccgctgccatcagagccagctccaagctggccatgatgaagaaacgggac
gaggcgaaggacgaaggcgcgaaaagcaaagcaccctcttcaccgaggaaaaacaaaact
tctccgaagaaagagccgcgtgcttcttcgatttcggacatgaagttcacacccaaagca
ggaacgacaccgacggcgctgaagacgtctcccaagaagcccgagagcacaagtacaagt
cctgacgatgcagagaagaagaagatgcacacgctagctttcaggaattacctcaacaga
gacggaccgcgggcgctgggatccaaggaaatccccgagggagcagagaactgtttggag
gggtgtgtgtttgtgctgaccggagtcctggagtcgatggagagagacgacgccaaagct
ctcattgagcgtcacggaggcaaagtgacgggaaacgtcagcaagaagaccaactacctg
gtgcagggcagagacagcggagcgtccaaactggacaaggctgagagtttaggcaccacc
atcctggatgaggacggcttgttggagctgatcagaaccaaaccaggaaagaagtcaaag
tatgagatcgctgcagaagccgagtgcaaagcctcaaacaccagaactcctccgagtcgg
acctcaaaggtcacccccaaggctcagaagatctccccctccaaggggaactccaggtcc
cccaagaccccgagcccctcaaagacgggccaggcacacagagccagcggcagcaggacc
ccaactgggaggggctctggacagacggcccggagggagctaggccttgcctcctcatcc
tcctcttcctcagctcctggaccctcccccccttccccgcagggggacgctgccggtctc
ctgtgggtggacaagtaccgtccgcgttccctgaaggctgtgatcggccagcagggggag
cagagctgcgccaacaagctgctccgctggctgcagaactggcacagacaccacagcgga
ggagcggacaaacccgcagcgtcgaggtttggtaaatttggaggagggaaagacgacgga
tcgggatacaaagccgctctgctctctgggcctccaggggtggggaagacgaccacagct
gccctggtctgtgaggagctgggcttcagctacgtggagatgaacgccagctgcactcgc
agcaaaaacagcctgaaggaagtcgtggcggagtcgctcaacaacaccagcatcgagaac
ttctacagaggaacgtctcagacggtgagcagtaggcacgtcctcatcatggacgaggtg
gacggcatggcgggaaatgaggaccgaggaggaatccaggaaatgatcggcctgatcaaa
aactccaagattcccatcatctgcatgtgcaacgaccgcaaccaccagaagatcaggtcg
ttggccaattactgcttcgacctgcgcttccagaggccgcgggtggagcagatcaaggga
gccatgatgtctcttgcttataaagagggaatcaagatccctcctccggctctcaatgaa
atcatcttggcctccaaccaggacgtgcgacaggtgattcacaacctgagcatgtggtcg
gccaaagacaaggtgatgacgtacgaccggtgcaagtccgacgcggccagcgcccgcaag
gacacgaagctggggccgttcgacgtctgcaggaaggtgttcgcctcgggcgaagagacg
gcccacatgagcctcatcgacaagtccgacctcttcttccacgactactctctggcgccg
ctcttcgtccaggagaactacctgcacgtccgtccggctgcggctcgcggagacatgaag
tcccacctggtgctgctcagtaagaccgccgactccatcgccgacggcgacctggtggac
agacggatccgatcgagtcagaactggtccctgcttcccactcaggccatctttgccagc
gtgttgccgggcgagctcatgagaggctacatgtctcagttccccgtcttccccagctgg
ctgggcaagaactcctctaccaacaaacattcccgcatcgtgcaggagctgacctcacac
atgagcttaaagaccctgagcagcagacaggcggtcaacctggactacatgcattacctg
cgccatgcgctgctgcatccgctgcagaggcacgggacagagggagcggcgcaggccgta
cagctgctggacgactaccagctcctcaaggaggacgtggacagcatcatggagatcagt
gtgtggggcgggcagcctgacccctactccaaactggaccccaaggtgaaggcagctttc
acgcgggcgtacaacaaggaggtccacctgacgccgtattccctccaaactgtaaagaag
ggtcgccgaggaggaggaggagcggatctggacggtggagacgaaggtccagacgaccag
gagtctggggacgaagccgagggcctcaaagcagacgccatgatcaaacagaagaaggcc
aaaacaactaaagagtcgacgaaggagaagaagaaagagtccgggaaaggcaaaggcaag
gggaaaggcaaagcaaagaaatga
DBGET
integrated database retrieval system
