| Entry |
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| Name |
(RefSeq) collagen alpha-1(II) chain-like isoform X1
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| KO |
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| Organism |
pmei Poecilia mexicana (shortfin molly)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pmei00001]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106914725
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106914725
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:pmei00536]
106914725
Glycosaminoglycan binding proteins [BR:pmei00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
106914725
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
Unknown
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| AA seq |
1487 aa
MFSFVDSRTVLLLVASQVVLLSVVRCQQEDDQEAGGCIQDARLYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADATAPIEAFGAKGQKGEPGEIADVVG
PRGPPGPMGPSGEQGMRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMSQGFDEKAGTASMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGETGEPGPAGPIG
PRGPPGPSGKPGSDGDPGKPGKPGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGETGAAGESGSNGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGAGGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGESGPKGELGPAGPQG
APGPAGEEGKRGARGEPGTAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGEAGLPGARGLTGRPGDTGPQGKVGASGAPGEDGRPGPPGPLGARGQPG
VMGFPGPKGANGEPGKPGEKGLVGRPGLRGLPGKDGETGPSGPPGPAGPAGERGEQGQPG
PPGFQGLPGPTGSPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGSAGPQGLQGPRG
LPGTPGSDGPKGAIGPAGALGAQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEGAPG
KDGGRGLTGPIGPPGPSGPNGAKGETGPTGPSGAPGVRGAPGDRGELGPPGPAGFAGPPG
ADGQPGAKGELGEPGLKGEAGASGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGPPGPNGNPGAAGPAGPAGKDGPKGVRGDAGPPGRPGDAGLRGPSGPPGEKGEQG
PTGEPGADGPSGPQGLAGGRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDRGPPG
PVGPPGLTGPAGEPGREGTSGSDGPPGRDGAAGVKGERGNTGPAGAPGAPGAPGAPGPVG
PLGKQGDRGEAGAQGPAGPPGLAGARGIAGPQGPRGDKGEAGESGERGQKGHRGFTGLQG
LPGPPGPAGDAGPAGPAGSSGAKGPPGPLGPAGKDGSNGQPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDISAFAGLGQTEKSPDPLRYMRADEASSSLRQHDIEVDSTIK
SLNTQIENLRSPDGTQKNPARSCSDLKLCHPEWKSGDYWVDPNLGSTADAIKVFCNMETG
ETCVYPSIAKVPKKNWWTSKSKARKHIWFGETMNGGFHFSYAQEGPAANAANVQLTFLRL
LSTEASQNFTYHCKNSIAYMDQASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDSCKS
HTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL |
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| NT seq |
4464 nt +upstreamnt +downstreamnt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatctcaagttgtttta
ctatccgtggtcagatgtcagcaagaagacgaccaggaggcaggcggctgcatccaggac
gcccggctgtataatgataaggatgtgtggaagccagagccgtgccgcatctgtgtgtgc
gacagcggagcggttctgtgcgatgagataatctgcgaggagatcaaagagtgtgccaac
cccatcatcccatctggagaatgctgccccatctgccccgctgatgccactgcccccatt
gaggcgtttggtgccaagggccagaagggagaaccaggagagattgcagatgtcgtagga
cctagaggaccaccaggccccatgggcccctcaggtgagcaggggatgcgtggagaagct
ggcgcaaagggtgacaagggaaatcctggaccaagaggaagagatggcgaacccggcaca
cctggaaaccccggaccacctggaccacccggcccaccagggctgggagggaactttgct
gctcagatgtctcaaggctttgatgaaaaggctggaactgcttcaatgggtgtgatgcaa
ggaccaatgggccccatgggtccccgtggcccccctggacctagcggagctcctgggcct
cagggtttccaaggagcacctggagagactggagagcccggtccagctggaccgattgga
cctcgtgggccacccgggccatctggaaaaccaggaagtgacggtgatcctggaaaacct
ggcaaacccggtgagcgcggacctgcagggcctcagggagctcgtggattccctgggaca
cctggacttcctggaataaaaggacacagaggtcacccaggtctggatggagcaaaggga
gagactggtgctgctggagccaagggtgagactggtgcagctggagaaagcggcagtaat
gggcctatgggccctcggggtctacctggtgagaggggacgtcctggagcttctggagct
gcaggagcccgtggaaacgatggcttgcctggtccagctggtcccccgggcccagttggt
cctgctggagctccaggtttcccaggatccccaggctccaagggtgaagcgggtcctaca
ggcgcccgtggagctgaaggagcacagggaccccgcggagaggccggcacgccaggatca
cctggaccagctggggcggggggtaaccccggcactgatggtattcctggggctaaaggt
tctgctggggctcctggaattgctggcgcacctggcttccccggcccccgaggcccacct
ggacctcagggagcaactggacctcttgggcccaaaggacaatctggagatccgggtctt
ccaggactgaagggtgaatctggaccaaaaggagagcttggcccggctgggcctcaaggg
gctcctggccctgctggagaagaagggaagcggggtgcgaggggagagccgggaactgct
ggaccaaacggacctccaggagaaagaggagctcctggtaaccgtggtttcccaggtcag
gatggtcttgctggtgctaagggagcccctggtgaccgtggcgtccctggtgctgctggg
cctaaaggtgccactggagaccccggacgtacaggcgaggctggcctcccaggagccaga
ggtcttactggtcgtcctggagatactgggccgcagggcaaagttggagcttctggcgct
ccaggtgaggacgggcgtcccggtccacctggtcccctgggcgcacgcggacagccagga
gtcatgggattccccggaccaaaaggagcaaatggtgaacctggaaaaccaggagagaag
ggactcgttggtcgacctggtctgagaggactacctggaaaagatggtgagactggtcct
tctggacctcctggacctgctgggcctgctggagagagaggagagcaaggacagcctgga
cctcctggcttccagggtctgcctggtccaactggttccccaggagagggtggaaaacct
ggagatcagggtgttcctggagagggtggagctcctggcgctgttggacccagaggtgag
cgtggtttccctggtgagcgcggtagcgctgggcctcagggtcttcaaggaccgcgcgga
cttcctgggacaccaggaagtgacggacccaagggagcaattggaccagctggagctctt
ggagctcaagggcccccaggcctgcagggtatgcctggagagagaggagctggaggcatc
ccaggagccaagggagacagaggtgataatggacagaaggggcctgaaggcgctcctgga
aaagacggtggtagaggtttgactggtcccattggtccccctggcccatctggacccaac
ggtgccaagggtgagactggaccaactggtccttctggtgctcctggggttcgtggtgct
cctggtgaccgtggtgagcttggtcctcctgggcctgcgggcttcgctggacctcctggt
gcagatggtcagccaggtgctaagggagagttaggtgagcccggactgaagggagaagct
ggtgcttctggacctcaggggccctccggagctcctggacctgtgggacctactggcgta
tctggacctaagggagcacgcggtgcccagggagcgcctggagcaacaggtttccctggt
gctgctggcagagttggacctcctggtcccaatggtaaccctggtgctgccggtcctgct
ggtcccgctggtaaggacggtccgaaaggtgttcgcggtgacgccggtcctccaggacgg
ccaggagacgctgggcttcgtggaccaagtggacctccaggagagaagggagagcaagga
ccgacgggagagcctggagctgatggcccttcagggccgcagggtttggctggaggtcgt
ggtattgttgggctgcccggtcagcgcggtgagagaggtttccctgggctccccggacct
tctggagagcctggtaaacagggagcatccggtggtgctggtgaccgaggaccgcctgga
cccgttgggcctcctggactcactggacctgctggagagccaggcagagagggcacatct
gggtcagatggacctcctggtagagatggagctgctggagtcaagggagagcgaggtaac
accggtcctgcaggcgctcccggagctccaggcgcccctggggctcccgggccggttggg
cccctcggcaaacagggagacagaggagaagctggcgctcaaggacctgcaggaccacca
ggactggctggagctagaggaattgctggaccccaaggaccacgtggagataagggggag
gcgggtgagtctggagagagaggtcagaagggtcaccgcggcttcaccggtctgcagggt
cttcctggacctccaggtcctgctggagatgccggacctgctggacctgctggatcaagt
ggcgctaagggaccccctggtccacttggacctgctggcaaagacggatctaatggacag
cctggtcccattggaccccccggacctcgaggacgctctggagaaactggtcctgctggt
cctcctgggaaccccggcccccctggtcctcctggcccaccaggtccaggcattgacatc
tccgccttcgctggcctgggccagactgagaagtctcctgatcctctcaggtacatgagg
gctgacgaggcctccagctccctgaggcagcatgacattgaggtcgattccacaatcaag
tccctcaacacccagattgagaacttgcgcagccctgacggtacccagaagaacccggct
cgctcttgcagtgacctaaagctgtgccaccctgagtggaagagcggtgactattgggtg
gatcctaacctcggaagcacagccgacgcaatcaaggtcttctgcaacatggagacagga
gagacctgcgtctacccaagcatcgccaaagtaccaaagaagaactggtggaccagcaag
agcaaggcccgcaaacacatctggttcggagagacaatgaatggcggattccacttcagc
tatgctcaggaaggtcctgctgccaacgctgccaacgtccagctgaccttcttgaggctt
ctgtccactgaagcgtcccagaacttcacttatcactgcaagaacagcattgcctacatg
gatcaggcctcaggaaacctgaagaaggcgttgctactgcagggctccaacgacgtggag
atccgcgcagagggcaacagtcgcttcacgtacagcgtgttggaggatagctgcaagagt
cacacaggccggtggggcaagactgtctttgagtacaaaacacagaaaacctcccgtctg
ccaatcgtagacattgctccaatggacatcggaggagcagatcaagaattcggagtggat
ataggcgccgtctgcttcttgtaa |
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