Poecilia mexicana (shortfin molly): 106914725
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Entry
106914725 CDS
T08022
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei04510
Focal adhesion
pmei04512
ECM-receptor interaction
pmei04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106914725
04518 Integrin signaling
106914725
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106914725
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmei00536
]
106914725
Glycosaminoglycan binding proteins [BR:
pmei00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106914725
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
106914725
NCBI-ProteinID:
XP_014837206
Ensembl:
ENSPMEG00000000452
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQQEDDQEAGGCIQDARLYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADATAPIEAFGAKGQKGEPGEIADVVG
PRGPPGPMGPSGEQGMRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMSQGFDEKAGTASMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGETGEPGPAGPIG
PRGPPGPSGKPGSDGDPGKPGKPGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGETGAAGESGSNGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGAGGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGESGPKGELGPAGPQG
APGPAGEEGKRGARGEPGTAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGEAGLPGARGLTGRPGDTGPQGKVGASGAPGEDGRPGPPGPLGARGQPG
VMGFPGPKGANGEPGKPGEKGLVGRPGLRGLPGKDGETGPSGPPGPAGPAGERGEQGQPG
PPGFQGLPGPTGSPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGSAGPQGLQGPRG
LPGTPGSDGPKGAIGPAGALGAQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEGAPG
KDGGRGLTGPIGPPGPSGPNGAKGETGPTGPSGAPGVRGAPGDRGELGPPGPAGFAGPPG
ADGQPGAKGELGEPGLKGEAGASGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGPPGPNGNPGAAGPAGPAGKDGPKGVRGDAGPPGRPGDAGLRGPSGPPGEKGEQG
PTGEPGADGPSGPQGLAGGRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDRGPPG
PVGPPGLTGPAGEPGREGTSGSDGPPGRDGAAGVKGERGNTGPAGAPGAPGAPGAPGPVG
PLGKQGDRGEAGAQGPAGPPGLAGARGIAGPQGPRGDKGEAGESGERGQKGHRGFTGLQG
LPGPPGPAGDAGPAGPAGSSGAKGPPGPLGPAGKDGSNGQPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDISAFAGLGQTEKSPDPLRYMRADEASSSLRQHDIEVDSTIK
SLNTQIENLRSPDGTQKNPARSCSDLKLCHPEWKSGDYWVDPNLGSTADAIKVFCNMETG
ETCVYPSIAKVPKKNWWTSKSKARKHIWFGETMNGGFHFSYAQEGPAANAANVQLTFLRL
LSTEASQNFTYHCKNSIAYMDQASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDSCKS
HTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatctcaagttgtttta
ctatccgtggtcagatgtcagcaagaagacgaccaggaggcaggcggctgcatccaggac
gcccggctgtataatgataaggatgtgtggaagccagagccgtgccgcatctgtgtgtgc
gacagcggagcggttctgtgcgatgagataatctgcgaggagatcaaagagtgtgccaac
cccatcatcccatctggagaatgctgccccatctgccccgctgatgccactgcccccatt
gaggcgtttggtgccaagggccagaagggagaaccaggagagattgcagatgtcgtagga
cctagaggaccaccaggccccatgggcccctcaggtgagcaggggatgcgtggagaagct
ggcgcaaagggtgacaagggaaatcctggaccaagaggaagagatggcgaacccggcaca
cctggaaaccccggaccacctggaccacccggcccaccagggctgggagggaactttgct
gctcagatgtctcaaggctttgatgaaaaggctggaactgcttcaatgggtgtgatgcaa
ggaccaatgggccccatgggtccccgtggcccccctggacctagcggagctcctgggcct
cagggtttccaaggagcacctggagagactggagagcccggtccagctggaccgattgga
cctcgtgggccacccgggccatctggaaaaccaggaagtgacggtgatcctggaaaacct
ggcaaacccggtgagcgcggacctgcagggcctcagggagctcgtggattccctgggaca
cctggacttcctggaataaaaggacacagaggtcacccaggtctggatggagcaaaggga
gagactggtgctgctggagccaagggtgagactggtgcagctggagaaagcggcagtaat
gggcctatgggccctcggggtctacctggtgagaggggacgtcctggagcttctggagct
gcaggagcccgtggaaacgatggcttgcctggtccagctggtcccccgggcccagttggt
cctgctggagctccaggtttcccaggatccccaggctccaagggtgaagcgggtcctaca
ggcgcccgtggagctgaaggagcacagggaccccgcggagaggccggcacgccaggatca
cctggaccagctggggcggggggtaaccccggcactgatggtattcctggggctaaaggt
tctgctggggctcctggaattgctggcgcacctggcttccccggcccccgaggcccacct
ggacctcagggagcaactggacctcttgggcccaaaggacaatctggagatccgggtctt
ccaggactgaagggtgaatctggaccaaaaggagagcttggcccggctgggcctcaaggg
gctcctggccctgctggagaagaagggaagcggggtgcgaggggagagccgggaactgct
ggaccaaacggacctccaggagaaagaggagctcctggtaaccgtggtttcccaggtcag
gatggtcttgctggtgctaagggagcccctggtgaccgtggcgtccctggtgctgctggg
cctaaaggtgccactggagaccccggacgtacaggcgaggctggcctcccaggagccaga
ggtcttactggtcgtcctggagatactgggccgcagggcaaagttggagcttctggcgct
ccaggtgaggacgggcgtcccggtccacctggtcccctgggcgcacgcggacagccagga
gtcatgggattccccggaccaaaaggagcaaatggtgaacctggaaaaccaggagagaag
ggactcgttggtcgacctggtctgagaggactacctggaaaagatggtgagactggtcct
tctggacctcctggacctgctgggcctgctggagagagaggagagcaaggacagcctgga
cctcctggcttccagggtctgcctggtccaactggttccccaggagagggtggaaaacct
ggagatcagggtgttcctggagagggtggagctcctggcgctgttggacccagaggtgag
cgtggtttccctggtgagcgcggtagcgctgggcctcagggtcttcaaggaccgcgcgga
cttcctgggacaccaggaagtgacggacccaagggagcaattggaccagctggagctctt
ggagctcaagggcccccaggcctgcagggtatgcctggagagagaggagctggaggcatc
ccaggagccaagggagacagaggtgataatggacagaaggggcctgaaggcgctcctgga
aaagacggtggtagaggtttgactggtcccattggtccccctggcccatctggacccaac
ggtgccaagggtgagactggaccaactggtccttctggtgctcctggggttcgtggtgct
cctggtgaccgtggtgagcttggtcctcctgggcctgcgggcttcgctggacctcctggt
gcagatggtcagccaggtgctaagggagagttaggtgagcccggactgaagggagaagct
ggtgcttctggacctcaggggccctccggagctcctggacctgtgggacctactggcgta
tctggacctaagggagcacgcggtgcccagggagcgcctggagcaacaggtttccctggt
gctgctggcagagttggacctcctggtcccaatggtaaccctggtgctgccggtcctgct
ggtcccgctggtaaggacggtccgaaaggtgttcgcggtgacgccggtcctccaggacgg
ccaggagacgctgggcttcgtggaccaagtggacctccaggagagaagggagagcaagga
ccgacgggagagcctggagctgatggcccttcagggccgcagggtttggctggaggtcgt
ggtattgttgggctgcccggtcagcgcggtgagagaggtttccctgggctccccggacct
tctggagagcctggtaaacagggagcatccggtggtgctggtgaccgaggaccgcctgga
cccgttgggcctcctggactcactggacctgctggagagccaggcagagagggcacatct
gggtcagatggacctcctggtagagatggagctgctggagtcaagggagagcgaggtaac
accggtcctgcaggcgctcccggagctccaggcgcccctggggctcccgggccggttggg
cccctcggcaaacagggagacagaggagaagctggcgctcaaggacctgcaggaccacca
ggactggctggagctagaggaattgctggaccccaaggaccacgtggagataagggggag
gcgggtgagtctggagagagaggtcagaagggtcaccgcggcttcaccggtctgcagggt
cttcctggacctccaggtcctgctggagatgccggacctgctggacctgctggatcaagt
ggcgctaagggaccccctggtccacttggacctgctggcaaagacggatctaatggacag
cctggtcccattggaccccccggacctcgaggacgctctggagaaactggtcctgctggt
cctcctgggaaccccggcccccctggtcctcctggcccaccaggtccaggcattgacatc
tccgccttcgctggcctgggccagactgagaagtctcctgatcctctcaggtacatgagg
gctgacgaggcctccagctccctgaggcagcatgacattgaggtcgattccacaatcaag
tccctcaacacccagattgagaacttgcgcagccctgacggtacccagaagaacccggct
cgctcttgcagtgacctaaagctgtgccaccctgagtggaagagcggtgactattgggtg
gatcctaacctcggaagcacagccgacgcaatcaaggtcttctgcaacatggagacagga
gagacctgcgtctacccaagcatcgccaaagtaccaaagaagaactggtggaccagcaag
agcaaggcccgcaaacacatctggttcggagagacaatgaatggcggattccacttcagc
tatgctcaggaaggtcctgctgccaacgctgccaacgtccagctgaccttcttgaggctt
ctgtccactgaagcgtcccagaacttcacttatcactgcaagaacagcattgcctacatg
gatcaggcctcaggaaacctgaagaaggcgttgctactgcagggctccaacgacgtggag
atccgcgcagagggcaacagtcgcttcacgtacagcgtgttggaggatagctgcaagagt
cacacaggccggtggggcaagactgtctttgagtacaaaacacagaaaacctcccgtctg
ccaatcgtagacattgctccaatggacatcggaggagcagatcaagaattcggagtggat
ataggcgccgtctgcttcttgtaa
DBGET
integrated database retrieval system
