Poecilia mexicana (shortfin molly): 106915644
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Entry
106915644 CDS
T08022
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106915644 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106915644 (xab2)
03041 Spliceosome [BR:
pmei03041
]
106915644 (xab2)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106915644 (xab2)
Spliceosome [BR:
pmei03041
]
Complex B
Other components
Prp19-related factors
106915644 (xab2)
Complex C
106915644 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
TPR_MalT
NRDE-2
SNAP
Tcf25
TPR_1
Motif
Other DBs
NCBI-GeneID:
106915644
NCBI-ProteinID:
XP_014838858
Ensembl:
ENSPMEG00000012218
UniProt:
A0A3B3X5H8
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MPSLNGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPAYEEVNNCHERALVFMHKMPRIWIDYCQFVVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVHSLPLPETALRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQEEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTVYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCMRFADMECKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTSSTGTISDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDDDEDEDEDDQGPDEVQLEQKSVPT
AVFGGLKED
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccttccctaaatggaaaagctgacgttttatttgaggatgatgatcttccctatgaa
gaggagattatcaggaatccatactcagtcaagtgttggatgcgctacattgaattcaaa
caaaatggagccaaatccaccctgaacatgatatatgaacgggctctgaaggaattgcct
ggaagctataagttgtggtacaattatctgagagaaaggaggaaacaagtcaaaggaaaa
tgcattacagatccagcatatgaagaggtcaataactgccacgaaagagcacttgtgttt
atgcacaagatgcccaggatatggattgattactgtcagttcgtcgtgtcacagtgtaag
atcacgagaagtcggagaacgtttgaccgggctctaagagcactacctgtaacccagcac
ccacgaatctggcctttgtacctgcgcttcgttcacagcctgcccctgcctgaaacagcc
ctgcgggtatatcgaaggtaccttaagctatctccagagaatgcagaagagtacatagac
tacttgcggtctgttggtcgcttggatgaagcagctgtgcgattagcagcaattgtaaac
gatgaaagctttgtgtccaaagagggcaagtccaactatcagctgtggcacgagctgtgc
gacctgatctctcagaatcccgataaagtgacctctttaaatgttggagccatcatacga
ggtggcctcacacgctttacagaccaacttggaaaactttggtgctctttggctgattat
tacatcaggagtggccactttgagaaagcacgggatgtttatgaggaagccatacttact
gtagtaactgtgagggatttcactcaagtgtttgatagctatgctcagtttgaggagagc
atgattgctgcaaagatggagaccactgctgagatgggacaagaggaggaagatgacata
gacctggagcttcgtctggcccgctttgagcagctaattgcccggcggccacttctgctc
aacagtgtactgctgaggcagaatccccataatgtgcacgagtggcacaagcgagtaaaa
ctttatgaaggaaatccacgacagatcatcaatacatacactgaggcagtacagacagtg
gatccaatgaaggccactggaaaacctcattctctctgggtttcttttgctaaattctat
gaggaaaatgaacagctggatgacgccaggacaatctttgagaaggctactaaagtaaac
tacaaacaagtggatgaccttgctgcagtttggtgtgaatatggagagatggaacttcgc
catgagaattatgatcaggcactacgcatactgaggaaagctacagcaatcccatctaag
aaagcagagtactttgattcatctgagccagtccagaacagagtctacaagtccctgaag
gtctggtctatgctggcagacctcgaggagagtcttgggacttttcagtctacaaaagca
gtgtatgaccgcattattgatctacgcattgccactcctcaaattgtcatcaactatgcc
atgttccttgaagagcacaactactttgaggaaagctttaaagcatatgaacgagggatc
gctctcttcaagtggccaaatgtttatgacatctggaacacttaccttaccaagttcatt
gaccgctatggcggcaaaaaattggagcgagccagagatttatttgaacaagccctggat
ggctgccctgccaagtttgccaagaccgtttatctgttgtatgccaaactggaagaggag
tatggattggcacggcatgccatggctgtctatgaaagagcaacgcaggcagtagaaact
gaagagagacaccatatgtttaacatctacatcaagagagcagctgaaatttatggcgtt
acgtacaccagagctatttaccagaaggctattgaggttcttcctgatgagcatgcgagg
gatatgtgtatgcgatttgctgacatggagtgcaaacttggggagattgaccgtgccaga
gcaatctactcctactgctctcagatctgtgacccaagggtgacagcaaatttctggcag
acctggaaggaatttgagattcgccatggaaatgaggatacaattagggagatgttgaga
atcaagcgcagtgtccaggctacctacaacacccaggtcaactttatgtcctcgcaaatg
ctgaaggcttcaacaagctctacaggcactatttcagatcttgctcctggccagatggga
attgatgatatgaaaatgttggagcagaaagctcagcaacttgctgcagaggctgagcag
gacaaacccaaacccaaggagaaaattctgtttgtcaggagtgatacttctcgcagtgag
ttggctgagctttccaaacaagccaatcctgatgagataaatattgacgacgacgaggat
gaagatgaggatgaccaaggacccgatgaggtgcaacttgagcagaagagtgttccaaca
gctgtcttcggaggtcttaaagaggactga
DBGET
integrated database retrieval system
