Poecilia mexicana (shortfin molly): 106917311
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Entry
106917311 CDS
T08022
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03018
RNA degradation
pmei03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106917311 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
106917311 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106917311 (lsm8)
03041 Spliceosome [BR:
pmei03041
]
106917311 (lsm8)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106917311 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
106917311 (lsm8)
Spliceosome [BR:
pmei03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106917311 (lsm8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
106917311
NCBI-ProteinID:
XP_014841663
Ensembl:
ENSPMEG00000022567
UniProt:
A0A3B3Z2Q3
LinkDB
All DBs
Position
Unknown
AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSTQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSTLDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgccttggagagctacatcaaccgcaccgtggccattgtcacgtcagacggc
aggatgattgtaggaaccctgaagggcttcgatcagaccatcaacctgatcctggacgag
agtcatgagcgagttttcagctccactcagggggtggagcaggtggtgctgggactctac
atcgtcagaggagacaacgtagccgtcatcggagagatcgacgaggaaacggactccacg
ctggacctgggaaatatcagagccgagccactcaactccgttgtccactga
DBGET
integrated database retrieval system
