Poecilia mexicana (shortfin molly): 106918130
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Entry
106918130 CDS
T08022
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106918130 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmei03041
]
106918130 (dhx38)
Enzymes [BR:
pmei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106918130 (dhx38)
Spliceosome [BR:
pmei03041
]
Complex C
Other components
Step II factors
106918130 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_16
Flavi_DEAD
PhoH
Microtub_bd
Motif
Other DBs
NCBI-GeneID:
106918130
NCBI-ProteinID:
XP_014843113
Ensembl:
ENSPMEG00000015475
LinkDB
All DBs
Position
Unknown
AA seq
1274 aa
AA seq
DB search
MNKKQTLHINAGHYQRAIQEIMDDDDVSMHRLEGTQSGAQVGGLIVKKKSAASEPHVFRA
PTPRTSLLGLDLLAAQKRKEREIKEQEESNGNERNRKKSKVSSYKDWEESKSDSGSDEED
DDTSSATKKERKYRVTGSETPSNPGGVSEEFRRRHEQREKDRREQGVFASSKEDKTRDRE
RSKDKGRGRRSERDDRDGRHSRGNSSSRSERLERGERSERSQRDGSSERISRGSKRDEPA
TPQNRPRDGFTPSRSNWDEDDSGYGSSRHSQWESPSPAPSHRESDRSERSHRSGRESERR
DRSVRGRYTDDTPLPTPSYKYNEWANDRKHLGSTPRLSQGKGKKGEGGIDFDNEDEKEQW
EEDQKQADRDWYMMDEGYDEFHNPFTSTSEEYVKKREQILQKQTQKRISAQKRQINEDNE
RWETNRMLTSGVVQRLEVDEDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPIVPVKD
PTSDMAIISRKGSQLVRKHREQKERKKAQHKHWELAGTKLGDIMGIKKKEDEEPGGKVVG
EDGKVDYRADQKFAEHMKEKSEASSDFAKKKSILEQRQYLPIFAVRQQLLNIIRDNSIVI
VVGETGSGKTTQLTQYLHEDGYTRYGMVGCTQPRRVAAMSVAKRVSEEIGTNLGEEVGYA
IRFEDCTSEKTMIKYMTDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVV
SRRTDLKLIVTSATMDSDKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQAL
QIHLSGMVGDILIFMPGQEDIEVTSDQIVERLEDLENAPALAVLPIYSQLPSDLQAKIFQ
KAPDGVRKCIVATNIAETSLTVDGIMFVVDSGYCKLKVFNPRIGMDALQVYPISQANANQ
RAGRAGRTGPGQCYRLYTQSAYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFM
DPPPEDNMLNSMYQLWILGALDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSADIL
IIVSMLSVPAIFYRPKGREEESDQVREKFSVPESDHLTYLNVYMQWKNNNYSSIWCNDHF
IHTKAMRKVREVRSQLKDIMVQQKMNLMSCGSDWDIIRKCICAAYFHQAAKLKGIGEYVN
VRTGMPCHLHPTSSLFGMGYTPDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIK
HAGKSRQENRRRAKEELSNMEQEMVLAQEQLRARRDEQEKKSNACSVRAVKICTPGRKEE
APMTPRRTPARFGL
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaaacaaactttacacatcaatgcaggacattatcaaagagcgattcaggaa
attatggatgacgatgatgtgtccatgcataggctggaagggactcagtcaggtgctcaa
gttggaggtctgatagtaaagaagaagagcgctgcttcagagccacatgtttttcgggcc
cctacaccacgcacctctttgctgggcttggacctgctggctgcgcagaaaaggaaggag
cgggagattaaagagcaagaagagtctaatggcaatgaaagaaacaggaagaagtcaaag
gtttcctcctacaaagactgggaggaaagtaaaagtgactctgggtctgatgaggaggat
gatgacacaagtagtgccacaaagaaggagaggaagtaccgtgttacaggctctgagact
ccctccaatcctggaggcgtcagcgaagagttcagacgccggcatgagcagcgggagaaa
gacaggcgtgagcagggagtatttgcctcctccaaggaggacaagaccagagacagagaa
aggagcaaagataaaggaagggggcgacggagtgagagagatgatcgagacggtagacac
agtcggggcaacagcagcagccggtcggagcgcttggaacgcggtgagaggagcgagcgc
tcgcaacgagacggctcgtccgaacgcatcagcagagggagtaagagagacgaacccgcg
acaccgcagaatcgcccccgagatggcttcacaccttcccgatctaactgggatgaggac
gatagcggttatggcagctcgcggcattcccagtgggagtctccatctccggccccgtct
cacagagagtcagatcgctctgaaagaagccaccgttctgggcgagagagtgagaggagg
gacagatcagtcagaggccgttacactgatgacacacccctgcccaccccgtcctacaag
tacaacgagtgggccaatgataggaaacatttaggctccacacctcgtttgtcacaaggg
aaaggcaaaaaaggtgagggaggaatagatttcgataacgaggacgagaaagaacagtgg
gaggaggaccaaaagcaagctgaccgagactggtacatgatggacgagggctatgatgag
tttcacaaccctttcacctccacctctgaagaatatgtgaaaaagagagagcagatcctc
cagaagcagactcagaaaagaatatcagcgcagaagcgacagatcaacgaggataacgaa
cgctgggagacgaaccgcatgctgaccagtggtgttgtgcaaaggctggaggtggatgaa
gactttgaggaagacaacgctgctaaagtccacctgctggttcacaatctggttcctcct
ttcctggatggaagaatagttttcactaagcagccagagcccatcgtccctgtgaaagat
cccacctctgacatggccatcatctctcgaaaggggagccagcttgtccgtaaacatcgt
gagcaaaaggagcgcaaaaaggcacagcacaaacactgggagttggcaggcaccaagtta
ggcgatataatgggtatcaagaagaaagaggatgaagagcctggaggcaaagtggtggga
gaggacggcaaagtagactacagggctgatcagaaatttgctgagcacatgaaggagaag
agcgaagccagcagtgactttgctaagaagaagagcattctggagcagaggcagtacttg
cctatctttgccgtcaggcagcaacttctcaatatcataagggacaacagcatcgtcatt
gttgtcggggaaacgggtagcggtaagaccacccagctgacgcagtacctgcatgaagac
ggctacactcgctacgggatggtgggttgcactcagccccgacgagtggccgccatgagt
gtggccaaaagagtcagcgaggagatcggcaccaacctcggagaggaggttggatatgca
atccgctttgaggactgcacttcggagaaaacgatgataaagtacatgactgacgggatt
ctgctcagggagtctctgcgggagtcggacctggaccactacagtgcagttattatggac
gaggctcacgaacgctccctcaatacagatgtgctgtttggcctgctgcgggaggttgta
tctcgacgaaccgacttgaagctcatcgtgacctctgctactatggactcagacaaattt
gcagcattttttggcaatgtgcctattttccatattccagggagaacatttccagttgac
atattgttcagcaagaccccacaggaggactatgttgaggctgcagtgaagcaggctctg
cagatccacctcagtgggatggtgggagacatcttgatctttatgcctggacaggaggat
atcgaggtgacatcggatcagatcgtggaacgcctggaagacttggagaacgctcccgct
ctggctgtgctgcccatttactcacaacttccttctgacctccaagcgaagatcttccag
aaggctccagatggggttagaaaatgcattgttgccacaaacatcgcagagacgtcgctc
actgtggatgggatcatgttcgttgtggattcaggctattgcaaacttaaggttttcaac
cctcggatcggtatggatgctctccaggtttaccccatcagccaggctaatgccaaccag
cgcgccggccgagccggacgtactggaccaggacagtgttacaggctttacactcagagc
gcctataagaatgagatgctgaccaccaccatcccagagatccagagaaccaacctggcc
aacgtggtgctgctgctgaagtctctgggggtccaggacctgctcctgttccacttcatg
gacccaccgcctgaggacaacatgctcaactccatgtaccagctgtggatcctgggagct
ctggacaacacaggtgctctgaccccaaccgggcgtctgatggtggagtttccactcgac
cccgccctctcaaagatgctcattgtgtcctgtgacatgggctgcagtgcagacatcctc
atcatcgtctctatgttgtctgtgccagccatcttttacagacctaagggtcgcgaggag
gaaagcgatcaggtgagggagaagttctcagtccccgagagcgaccacctcacatacctg
aacgtctacatgcagtggaagaacaacaattattccagcatctggtgcaatgatcacttc
atccacaccaaggccatgcgcaaggtgcgcgaggtgcgttcccagttaaaggacatcatg
gttcagcagaagatgaacctcatgtcctgtggctcggactgggacatcatcagaaagtgt
atctgtgctgcttacttccaccaggcggccaagctcaagggcatcggtgaatatgtgaac
gtgaggacagggatgccatgccacctccaccccaccagctccctgtttggtatgggctac
acccccgactacatcatctaccatgagctcgtgatgaccacaaaggagtacatgcagtgt
gtcactgctgtggacggagagtggctggcggagctgggacccatgttttacagcatcaaa
cacgcaggaaagagcagacaggagaaccgtcggcgggccaaggaggagctgagcaacatg
gagcaggagatggtcctggctcaggagcagctgagggcgcgtcgagatgagcaggagaag
aagagcaacgcctgcagcgtgagggcagtgaaaatctgcacaccagggagaaaagaggag
gcgcctatgacacccagacgcaccccggcccgctttggactgtaa
DBGET
integrated database retrieval system
