Poecilia mexicana (shortfin molly): 106920225
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Entry
106920225 CDS
T08022
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106920225 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmei04131
]
106920225 (vps8)
Membrane trafficking [BR:
pmei04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
106920225 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Clathrin
TPR_VPS8_2
WD40_CDC20-Fz
TPR_Vps41
zf-RING_Vps41
zf-RING_UBOX
zf_RING_Vps8_fungal
zf-RING_11
zf-RING_5
ANAPC4_WD40
Beta-prop_EML_2
zf-RING_2
zf-C3HC4
Beta-prop_HPS5
WDR55
EIF3I
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
106920225
NCBI-ProteinID:
XP_014846586
Ensembl:
ENSPMEG00000011554
LinkDB
All DBs
Position
Unknown
AA seq
1413 aa
AA seq
DB search
MSQSPDSRSLLSASSQLNLMEVESIDDKEFDIPQVDTPPTLESILSQMEEEEDPFVLEDT
CLLNTDNMDAQSYDTSSLASSDSGDPAHLKRKRRTLDQNAAVHGSVLRLSLLKGISAQIV
AAADKVDAGLPTAIAMSGVIAVGTSHGLALVFGKDTNQALRLCLGNKTTGAEFGAVSALS
INHDCSRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGG
SVFELTFRRVMGMRSCDSRCLFSGSKGEVCCIEPLRTPPDFRDHPITCYSLLAMASLTKI
LIIGLKPSLNVWMTLPYTKSDPSSVPQLAWQFVPVQKTVNPMLAFCKGDSVHFLLVKKEE
TGTIHVIKQRQLQLSCDIISLNWINSCSLVLLDSHEKLHVVDRPTQDVLETLDLEQVQLV
YNSRHFKSLATGGNVSQALALVGEKACYQSLSSYAGQIVCLGTKSAHIMSLRNWKERLDC
LLKQEHFTEALSLAWSFHEGTAKAVVGLHGDSQRRKAVISDKMVEILLHFTEYAVKKCPE
QGKLQVMEQHFQEVVPVLVDYCLLLQKADLLFNQLYSRLVENMVAKGVFLESLESYIVAN
RLGHITTPVMKDLLAHYHDNDMMDSLERCIVHLDVTSLDIQQVVQVCWNNQLYDAVIYIF
NRGMNDYITPMEKLFSVIGPRVREGRSLTGDDVVMGNKLLVYISCCLAGRAYPIGDIPED
LVVQVKYQVFEFLIRLHSGDSSQKEEVFPFIHTLLHFDTREFLNVLAMTFDDVQNDKQAL
EYQQRIVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPNNTLFVNRNLFDQVLEFLCCP
DDDSRHTERQQVLLELLQVGGVVQFNEERLFTLAEKAKFYQICEFLYEQKHLYDRIVDCY
LQDPLRKAEIFSYIHNLMSMPGYSSEEKLKVKEKVLQHMQELASLDPGKLADLVVWHFTE
EVQTIISELQASLCVSLQDDSLLFQFLRCLLESQEGSQSVSRLPLESELYELLLDLMCRF
EPQELLKFLHTSQHYRLEEAIQITEKYHCNEAKAYLLEKKGDIPGAFAGLLQTLKERLDV
LTAEMSGDIGGGVDGQDEEEADGEFTLTTVKSSLNQIILFCHRNCQNLDQEQRKDLWFPL
LDTMMASQKEVMGLSDKHISDGLKEMTLKVLNCMSSFISLPAIIQQILQDPVYGRGKLAE
IQGLILGMLDTFTYEQTLLETTTNLLNHDLHWSLAHLRSAVTRGLHPRQDCCNICLQHYK
RKQDTSEEIIVFSCGHLYHLQCLEQKDCGWGVASEPQQPWRCYKCSSSHGGRGGACSEPN
RSRSASLAQTQFSSGHQEKGAETHRKKVVAVATLDVQQELSWDHLRGLYRGPSRLSILSE
VSHGQSSEKTGFLLPVQPESFHLKLAPPPLFEE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagtctccagacagcaggagccttttatccgcttcttcccagctcaacctgatg
gaagtagagtcgattgacgataaggagtttgacattccccaggtggacaccccccccaca
ctggagagcatcctcagtcagatggaggaggaggaggaccctttcgttctggaggacacc
tgccttttaaacacggacaacatggacgctcagtcctatgacacgtcctccttggccagc
tctgacagcggagacccggcacacctcaaacgaaagagaaggactctggatcagaacgca
gcagttcacggctcggttcttcgcctcagcctgctgaagggcatctccgctcagatagtt
gctgctgctgacaaagtggatgctgggctgcccactgcaatagccatgtctggtgttatt
gccgtaggaacatctcatggtcttgccctggtgtttggaaaagacaccaaccaggctctg
cggctctgtctgggcaacaagacaaccggagcagagttcggcgccgtttcagctcttagc
atcaaccacgactgctcacgtctgctatgtggctttgccaagggtcagattacaatgtgg
gatctcgccaacggaaagcttttgaggaccatcactgatgcccatcctccagggacggcc
atactgcatgtgaagttcactgatgacccaactctggccgtgtgcaacgacagcggaggg
tctgtgtttgagctgaccttcaggagggtgatggggatgcgctcatgcgactcacgatgt
ctcttcagcggctctaaaggagaggtgtgctgtatagaaccgctgcggactcctccagac
ttcagagaccaccccatcacatgctactctctcctagctatggcttccctgaccaagatt
ctgatcattggactcaagcccagcctgaatgtgtggatgactcttccctacactaagtct
gatcccagcagcgtacctcagctggcctggcagtttgttcctgtccagaagacggtcaac
cccatgctggccttttgtaaaggagactcagtccacttcctgctggtgaagaaggaggag
acgggcaccatccatgtgatcaagcagaggcagctgcagctgagttgtgacatcatcagc
ctgaattggatcaacagttgcagcctggtgctgctggacagccatgagaagctgcacgtg
gtggaccggcccacccaggacgtcttggagacgctggacctggagcaggtgcagctggtc
tacaacagccgacacttcaagtccctagcaactggaggcaacgtctcccaggctctggca
ctggttggagaaaaggcctgctatcagtcactgtcaagctatgcaggacagatcgtctgc
ctgggcaccaagtcagctcacattatgtccctaaggaactggaaagagcgtctggactgt
ttactgaagcaggagcatttcactgaggctctgtctctggcctggtccttccatgaaggc
accgccaaggctgtggttggccttcatggagattcacagagaaggaaggcggttatcagc
gacaagatggtagagattcttctccattttacagagtacgctgtgaagaaatgcccggaa
cagggcaagctgcaggtcatggagcagcatttccaggaagtggtaccagtcctggtggat
tattgcctcctgctacagaaggctgacctgctgttcaaccaactgtactctcggctagtg
gagaatatggttgctaagggcgtcttcctggagtcactggagtcgtacatcgttgccaat
cggcttggtcacatcactacgcctgttatgaaggatctcctggcacattaccatgacaac
gatatgatggacagcctggagagatgcattgtccatctggatgtcacaagtctggacata
cagcaggtggtccaggtgtgttggaacaaccagctctatgatgcagtgatctatattttc
aaccgaggcatgaatgactacattactccgatggagaaactcttttcagtgattggtccc
agagtcagagaggggcggagcctaacaggtgatgatgtggtgatggggaataaattacta
gtttacataagctgctgtcttgctggaagagcctatccgattggagacatccctgaagat
ctggttgttcaggtcaaataccaggtgtttgagttcctgatccgtctccattcaggcgac
tcctcacagaaggaggaagtcttcccatttattcacacactcctccactttgacactcgg
gagttcctcaatgtccttgccatgacgtttgatgatgtccagaacgacaagcaggccctg
gagtaccaacagaggatagtggacatcttacttcaggtcatggtggacaaccctgacttc
actccctcccaagtcggtggtctcttcaccttcctggctcgccagctggccaaaccaaat
aacacactgtttgtgaacaggaacctttttgatcaggtgctggagttcctttgttgccct
gacgatgactctcgacatactgaacggcagcaggttctgctggagctgctacaggtcggg
ggagtggtccagttcaacgaagagcggctcttcacgctggcagagaaagccaagttctac
cagatctgtgagttcctttatgagcagaagcatctgtatgaccgcatcgtggactgctac
ttacaggacccacttcgaaaggcggaaatcttcagctacatccacaacctaatgtccatg
ccgggctacagctccgaggagaagctgaaggtcaaggagaaggtgctgcagcacatgcag
gagctggcaagcctggatcctggtaaattagctgacctggtggtgtggcacttcacagag
gaggtgcagaccattatctctgagctgcaggcttctctgtgtgtgtctctgcaggacgac
agtctacttttccagtttctccgctgcctcctggagtctcaagaaggatctcagtccgtg
tcccggctgcctctggagtctgaactttatgagcttctgctggacctgatgtgccgcttt
gaaccacaggagcttctgaagtttctccacacctcccagcattacaggcttgaggaggcc
atacagataacagagaagtaccactgtaatgaagccaaggcttatctgctggagaagaag
ggagatattcctggagcatttgctggattgctgcagaccctgaaggaaagactggatgtc
ctcactgcagagatgagtggcgacattggaggaggagttgacggacaggacgaagaggag
gcggatggtgaattcacactgacgacagtgaagagttcactcaaccaaataattctcttc
tgtcatcgaaactgtcagaaccttgatcaagaacaaaggaaggatctgtggtttccactc
ctggacaccatgatggcctctcagaaggaagtcatggggctcagcgataaacatatctca
gatgggctgaaggagatgaccctgaaggttctcaactgtatgagcagctttatctcactt
cctgccatcattcagcagatcctacaggatccagtttatggaagaggaaagctggcggag
atccagggactcattctgggcatgctggacacgttcacctatgaacagactctgcttgaa
acaacaacaaatctgctgaaccacgacctccactggtccctggcacacctccgctccgcc
gtcaccagagggctccatccacgtcaggactgctgcaacatctgcctgcagcactacaag
aggaagcaggacacttccgaggagatcattgtgttcagctgtggccacctataccacctg
cagtgcctggagcagaaggattgtgggtggggcgtggcctcggagccgcagcagccatgg
aggtgctacaaatgttcctccagccatggaggaaggggcggggcttgttctgagccaaac
agaagccgcagcgcatctctcgcccagactcagttttcatcaggacatcaagagaaagga
gctgagactcacaggaagaaggtggttgctgtggcaacattggatgtgcagcaggaactc
tcctgggatcacttgcgagggttgtacagaggaccgtccaggctgtccatcctctctgag
gtttcacatggccaaagcagtgagaaaacaggcttcctgcttccagtccagccagagagt
ttccacctgaagctcgctcctcctcctttgtttgaagagtag
DBGET
integrated database retrieval system
