Poecilia mexicana (shortfin molly): 106921243
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Entry
106921243 CDS
T08022
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106921243 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmei03041
]
106921243 (snrnp200)
Enzymes [BR:
pmei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106921243 (snrnp200)
Spliceosome [BR:
pmei03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
106921243 (snrnp200)
Complex C
U5 SnRNP specific factors
106921243 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
106921243
NCBI-ProteinID:
XP_014848275
Ensembl:
ENSPMEG00000021166
LinkDB
All DBs
Position
Unknown
AA seq
2136 aa
AA seq
DB search
MADVTARNLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKAQRTK
PQKLEERRDKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPSDDTRYHVLVNLGKKIT
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEAVVSTRL
TANLGEAGDVMSEKKKQLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRRMIQYCTMLASAQSEAEKERIIGKMESDQELSKIL
YQLQETEKEDIIREERSRRERVRKSRVDDLEAMDVDHGESVMPRQLLDLEDLAFSQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVSIDKLPKYAQAGFEGFKTLN
RIQSKLFKTTMETDGNLLLCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYIA
PMRSLVQEMVGSFGKRLASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLIGLSATLPNYEDVA
ACLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLN
AEIVLGNVQNVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLIHTAAN
VLDKNSLIKYDKRTGTFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLNRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVVKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHIQPITRSTLKVEL
TITPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNSEGRCVYITPM
EALAEQVFVDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPVVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLYCSEKELVPFLEKINDPTLKETLANGVGYLHE
GLTATERRIVEQLFNSGAVQVVVSSRSLCWGINVSAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDALLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSDHIKRCTDKGVESI
FDIMEMEDEDRTSLLQLSDGHMADVARFCNRYPNIELSYDVAERDNIKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAMGIH
NYTLYFMSDAYMGCDQEYKFSVDVKEADSEGESDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttaccgctcgtaacctgcagtatgagtacaaagcgaactcaaacttggtg
ctgcaagcggatcgctctctgatcgaccgcactcggagagatgagcccaccggtgaggtg
ctgtcgttggtggggaagctggaggggacaaagatgggggacaaagctcagaggaccaaa
ccccagaagctggaggaacgacgagataagaggagaaaaagagatgaggacagacacgac
atcaacaaaatgaaaggctttaccctcctgtctgagggcatcgatgaaatggtgggcata
gtgtacaagcccaaaaccaaagaaaccagagagacctatgaagtgttgctgagcttcatc
cacgcagctttaggagatcagcctcgtgatattctgtgcggagcggccgatgaagtgtta
gctgtgctgaagaacgacaaaatgagggacaaagaaaggcgacgtgaagtcgagcagctc
cttggcccgtccgatgacacgcgctatcatgtgctagtcaacctgggaaagaagatcaca
gattacggaggagacaaggacttgcagaatatggatgacaacattgatgaaacgtatggc
gtcaacgtgcagttcgaatctgatgaggaagaaggagatgaggaccagtttggcgaagta
cgagacgagcactcagatgaagacagcgaaggagaagaagctgttgtctccaccaggcta
acggcaaatctcggtgaggcgggcgacgtgatgtcagagaagaagaaacagttacatcct
cgggacatcgacgccttctggctccaacgtcagctcagtcggttctacgacgacgccatc
gtttctcaaaagaaggccgacgaagtcttggaaatcctcaagactgctagcgatgacaga
gagtgtgagaaccagctggtgctgctgctgggcttcaacacctttgacttcatcaaagtc
ctccgtcagcaccgccgcatgattcagtattgcaccatgctggccagcgctcagagcgag
gcagaaaaggagcggatcattggaaagatggagtcggatcaggagctttcaaagattctc
taccagctgcaggagactgagaaggaggacattatcagagaagaacgatctcgcagagag
agagtgaggaagtctcgggtggatgacttggaagcgatggacgttgaccatggagagtca
gtgatgcctcggcagcttctggacctggaagacttggccttcagtcaaggcagccacttc
atggccaacaagcgatgccagctgccagacggctcctttcgtaagcagcgtaaaggttac
gaagaagtccacgtgcccgctcttaagccgaaaccctttgctgatgacgaggtacttgtt
tccattgacaagttgcccaagtacgcccaggctggattcgaaggcttcaaaactcttaac
cgcattcagagcaagctgttcaagaccaccatggagacggatggaaacctgctcctgtgc
gcgcctacgggagccggtaagaccaacgtcgccttgatggcgatgctgagggaaatcggg
aagcacatcaacatggatggaacaatcaacgtggatgactttaaaatcatctacattgca
cccatgcgctccctcgtacaggagatggtgggaagttttggcaagcgtctcgcaagctac
ggcatcatcgtgtctgagctgaccggagaccaccagctctgcaaagaggagatcaacgcc
actcagatcatcgtctgcacccctgagaaatgggacatcatcacccggaaaggcggcgag
cgcacctacacccagctagtgcgccttatcatcattgatgaaatccacttgctgcacgac
gaccgtggccccgtgctggagtccctggtggcaaggaccatccgcaacgtggagctgacc
caggaggacgtgcggctgattggtctcagcgccacgctgcccaactatgaagatgtagcc
gcctgcctgcgcgttgatcctgcgaaggggctgttttactttgacaacagtttccgccct
gtgcccctggagcagacgtacgttggtatcacagaaaagaaagccatcaaacgtttccaa
atcatgaatgagattgtttatgaaaagatcatggagcatgctggaaagaaccaggtcctg
gtatttgtccactccaggaaagagacaggaaagaccgccagagccattcgggacatgtgc
ttggagaaggacactctgggtctgttcctgagagagggttctgcttctactgaagtgttg
cgaaccgaggcagaacaatgcaaaaacttggagctaaaagatttgcttccttatggcttt
gcgatccatcacgctgggatgaccagagtggaccgtacgctggtggaggatctgtttgca
gatcgacacatccaggttctggtgtccacagccactctggcttggggtgtgaacctgcca
gctcacaccgtcatcatcaagggaacccaggtttacagcccagagaaaggcaggtggacg
gagctgggagcgctggacattttacagatgctgggtcgagccggccgtccgcagtacgac
accaagggagagggaatcctgatcacgtctcacggagagctgcagtattacctgtccctg
ctgaaccagcagctgcccatagagagccagatggtggcgaagctccccgacatgctcaac
gcagagatagttctgggaaacgttcagaatgtgaaggatgctgtgaactggctcggctat
acctacttgtacgtgcgcatgctccgcaacccgacgctgtatggagtatcccatgacgac
cgaagttcggacccgctgctggagaggcgcaggatggacctgattcacacggccgccaac
gtcctggacaagaacagcctcatcaaatacgacaagaggacaggaaccttccaggtaaca
gacctgggtcgcattgccagccacttctacatcacccacgactccattcagacctacaac
cagctgctgaagccgacgctcagtgagatcgaactcttcagagtcttttctctgtcctca
gagttcaggaacatcacagtgagagaggaggaaaaacttgagcttcagaagcttctggaa
agagttcccattcctgtaaaggagagcatcgaggagcctagcgcgaagattaatgtcctg
cttcaagcgttcatctctcagctcaaactggaaggcttcgccctgatggcagacatggtt
tacgtcacacagagtgctggtcgtttaatgcgcgccatatttgagatcgtgctcaaccga
ggctgggcccagctcacagacaagaccatgaacctctgcaagatgattgacaaacggatg
tggcagtcgatgtccccgctgcggcagttcaagaagctgcctgaagaggtcgtcaagaag
atcgagaagaaaaacttccccttcgagcgtctctatgatctcaaccacaatgagattggt
gagctgatccgcatgccgaagatgggtaagaccattcataaatatgtgcaccagttcccc
aagctcgacctggccgtccacattcagcccatcactcgctccacgctcaaagtggagctg
accatcacgccggacttccagtgggacgataagattcacggatcttctgaagccttctgg
atcctggtggaggatgtcgacagtgaggtcatcctccaccatgagtacttcctgcttaag
gccaagtacgcccaggacgagcaccttgtgaccttcttcgttccggtgtttgagccttta
cctccgcagtacttcatccgcgtcgtctcggaccgatggctctcttgtgagacgcagctg
cccgtgtccttccgtcaccttatcctgcctgaaaagtacccgccacccacggagctgctg
gatctgcagccgctgcctgtcaccgcgctcagaaactctgccttcgaggctctttatcag
aacaagttccctttctttaaccccatccaaacacaagtcttcaatgctgtgtacaacagt
gatgataatgtgtttgttggagctccaactggcagcggaaagaccatctgtgcagagttt
gccatcctgaggatgctgctgcacaactcagagggtcgctgcgtctacatcaccccaatg
gaggcgctggcggagcaggtgtttgttgactggcaccagaagttccaggatatcctgaac
aagaaggtggttctgctgacgggagaaaccagcacggatctgaagttgctgggaaaaggc
gacatcatcgtcagcaccccggacaaatgggacatcctgtctcgtcgctggaaacagcga
aagaacgtccagaatgtcagcctcttcatcgtggatgagacgcacctcatcggaggagaa
aacggacccgtgctggaggtcatctgctcgaggatgaggtacatctcctctcaaatcgag
cgccccatccgcatcgtggctctcagctcgtcgttgtccaacgccaaagatgtggctcac
tggctgggctgcagcaccaccgctacgttcaacttccaccccaacgtcaggcctgtacct
ctggagctgcacatccagggcttcaacgtgagccacactcagacccgcctgctgtccatg
gccaagccggtgtatcacgccatcatgaagcactctccctccaagccggtcgttgtgttc
gtcccgtcccgtaggcagacccgcctcaccgccatcgacatcctcacgttctgcgccgcc
gatgtcgtccctcagaggttcctgtactgctctgagaaagaactggttccattcctggag
aaaatcaacgacccgactctgaaggaaactctagccaacggagtggggtacctgcacgag
ggcctgactgccactgagcgccggatagttgagcagctttttaactctggtgctgtccag
gtggtggtctcctcgcgttcgctctgctggggcatcaacgtctctgcccatctcgtcatt
gtcatggacacccagtactataatggaaaaatccacgcgtatgtggactatcccatatac
gatgtcctccagatggtcggcaaggcaaacaggcccatgctggatgatgaggggcgctgt
gttatcatgtgtcagggatctaagaaggacttcttcaagaagttcctttatgagcctctg
ccggtggagtcccatctggatcactgtctccacgaccacttcaacgccgagatcgtcacc
aagacggtcgagaacaagcaagacgctgtcgactatctgacctggacattcctctaccga
cggatgacgcagaaccccaactactacaacctgcaaggcatgtcccatcgccacctgtcc
gatcacctgtccgagctggtggaaaacaccctgcatgacctggagcagtccaagtgcatc
agcatcgaggacgaaatggacgtcgctccgctcaacctgggaatgatcgccgcttactac
tacatcaactacacaacaattgagttgttcagtatgtccctgaacgccaagacgaagatc
cgcgggttgatcgagatcatttccaacgcggctgaatacaagaacattcccatcaggcac
cacgaagacgcgcttctccgacagctggcacagaaagtcccccacaagctgaacaaccca
aagttcaacgatcctcacgtgaagaccaacctgctgctgcaggcccacctctccaggatg
cagctgagcgccgagctccagtcagacacggaagagatcctgagcaaggcgatccgtctg
attcaggcgtgcgtcgatgtgctgtccagtaacggctggctgagccccgccctggctgcc
atggagctggcgcagatggtcacccaggccatgtggtccaaggactcgtacctgaagcag
ctgccccacttcacctcagaccacatcaagcgctgcactgacaaaggtgtggagagcatc
tttgacatcatggaaatggaggacgaggacagaacgtctttgctgcagctctccgacgga
cacatggccgacgtggctcgcttctgtaaccgctaccccaacatcgagctttcttatgac
gtagcggagagggacaacatcaaaagcggcagtccagttctggtccaggtgcagctcgag
cgagaggaagaggtgaccggtccagtcatcgcaccactcttccctcagaaacgtgaggag
ggctggtgggtggtcatcggagaccccaagtcgaacagcctcatctctatcaagaggctg
actcttcagcagaaagcaaaggtgaagctggactttgttgctccggctatgggcatccat
aactacaccctatactttatgagcgacgcttacatgggctgtgaccaggagtacaaattc
agcgtggatgtgaaagaggccgacagcgagggggaaagtgactcagactaa
DBGET
integrated database retrieval system
