Poecilia mexicana (shortfin molly): 106921680
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Entry
106921680 CDS
T08022
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106921680 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106921680 (cnot1)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106921680 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106921680 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
106921680
NCBI-ProteinID:
XP_014848992
Ensembl:
ENSPMEG00000005868
LinkDB
All DBs
Position
Unknown
AA seq
2401 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIPIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDIPMDRIL
PDSGELAKTIMESSLADFIQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDIVKEVNPNLNFKEVTYE
LDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRSWKHAEGQLSFIQYSLINPEVFC
FADYPCHTVVIDLLKAPPEDDNREIATWKSLDLVESLLRLSELGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNATPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANRSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSACDKQTMD
TLTGISALSLGSTATSHTQSLQCLANSLTSALTNPLSPSKAFPPLPNPNPTTPFGVHSSI
SSQLPSMDSAISSSIGSSIGSSLGMPSVSTDPFGTRKMSTPVLNPPTFQQSKMKASDLSQ
VWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCM
LRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMY
YFGIAALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGS
ITTPGSVALAHAQAQSQQPPSLKAPQPGQPSTLATTTTTTTTTAAKTGTISRPTQSTFKK
DMPPSINTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKE
EFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLSETYRNIKVLLTSDKAAA
NFSDRSLLKNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLE
SSLRSMVFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLK
DKDKLKNLEEQLSAPKKEAKPPDEILPPPTTGDFVPFPAPSTTPAATTTTCTTTGPPTPQ
FSYHDINVYALAGLAPHININVNIALLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIA
MTTCEQIIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAA
LRAPTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQE
GRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNIPGFLPSNDLSQPTGFLA
QPMKQQAWATDDVAQIYDKCITDLEQHLHAIPPALAMNPLTQGLRNLLEAVALARNSRDG
IAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLI
ECRDEYKYNVEAVELLIRNHLVNMQQYDVHLAQSMENGLHYMAVAFAMQLVKLLLVDERS
VSHVTEADLFQTIEILMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSG
ISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLI
TRFFRLCTEMCVEISYRAQAEQQHNPAASVAIIRAKCYHNLDAFVRLIALLVKHSGEATN
TVTKINLLNKVLGIVVGVLIQDHDVRNTDFQQLPYHRIFIMLLLELNAPEHVLETINFQT
LTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYL
APFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSA
FPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSE
LRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLA
VDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVN
RPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGA
S
NT seq
7206 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acgaagaaaaactacagagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatttactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgattcaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctctgctacgccatcgacaatcccctgcac
taccagaagagtttgaagccatccgcccacttgtttactcagctgagtaaagtacttaaa
ctcagcaaggttcaagaggtaatttttggccttgctctgcttaactccagcaacacagat
cttcggggatttgctgcacagttcatcaagcagaaacttcccgaccttctgcggtcatac
gttgacgcagatctcggcggaaaccaggaaggtggcttccaagacattcctatagaggtg
ttgcacctgctgctctcccatctactgtttggacagaagggagccagtggggtagggcag
gagcagattgacgccttccttaagacactttgccgagatttcccccaagagcgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattcccatggacaggatctta
ccagactccggggagttagctaagaccatcatggagagttctctcgcagacttcattcag
gaagttggttacggcttttgtgccagtcttgacgaatgcagaaacataatcctccagtat
ggggtgagagaggtgacagccagccaggtagccagggttctgggaatgatggcccggacg
cactccggcctgtctgatggcatcccacttcagtccatttctgctccaggaagtggaatt
tggagtgatggtaaggacaagaacgacggctcacaggcccatacgtggaatgttgaggtt
ctcattgacatcgtcaaagaagtgaatcccaacctgaacttcaaagaggtgacgtacgaa
ctggaccaccccggatttctgatccgggacagcaagggcctgcagatcgtggtgtatggg
atccagcgggggctggggatggaggtcttccccgtcgatctcatttaccgctcgtggaaa
catgcagagggtcagctgtcgtttattcagtactctctgataaacccagaagtgttctgc
tttgctgactacccatgtcacactgtggtcattgacctccttaaagccccacctgaggat
gacaacagggagattgctacatggaaaagtctggacttggtggagagtcttctcagactc
tctgagcttgggcaatatgaacaggtgaagcagctcttcagcttccccatcaagcactgc
ccggacatgttggtgttggctctactgcagatctccacctcctggcacacgttgcgccat
gagctcatttccaccctcatgcccatctttcttggcaaccaccccaactctgccattatc
ctgcactacgcctggcatggacagggtcagtctccttccattcgtcagctgattatgcat
tcgatggctgagtggtacatgagaggggagcagtatgaccaggccaagctgtctcgcatc
ctggatgtggcccaggacttgaagtctctatcgatgctgctgaatgctactccgtttgcc
tttgtcattgacctcgctgcactcgcctctcgccgtgaatacctcaaacttgataaatgg
ctcactgacaaaatccgggagcatggagaaccgttcatccaggcatgcgttacgtttctg
aagagacgctgcccatccatcatgggaggtctggctcctgacaaggaccagcccaaaagt
gcccagctgcccccagagactttagccaccatgcttgcctgtttgcagtcatgtgcaggg
agtgtgtcccaggaattgtcggagacgatcctcaccatggtcgccaaccgtagcaatgta
atgaataaagctcggcagcctccaccaggagtgatgccgaaggggcgcgccccaagcacc
agcagcctggatgccatctcacctgtacaggtatcggcatgtgacaaacaaacgatggac
actctgactggcataagcgccttgagtctgggcagcaccgccacctcccacactcagagc
ttgcagtgcctcgccaattcactgacctcggctctcactaaccctctgtccccctcaaag
gccttccctcctcttccaaacccaaaccccaccacaccttttggggttcatagcagtatc
agttcccagcttcctagtatggactctgccatcagctccagcattggctccagcatcggc
tccagtctgggaatgccgtcagtcagcacggatcccttcggcaccaggaagatgagcaca
cctgtcctgaaccctcctacctttcagcagagtaagatgaaggcctctgatctttctcag
gtgtggccagaggctaaccagcactttagtaaggagatcgacgacgaagcaaacagttac
ttccagcgtatctacaaccacccacctcacccgaccatgtctgtggacgaagttctggag
atgcttcagaggtttaaggactcgaccatcaagcgagaacgagaggtgttcaactgcatg
cttcgaaacttatttgaggaataccgattcttccctcagtatccggacaaagaactgcac
atcactgcctgcctctttggtggcatcattgagaagggtttggtcacctacatggcgctg
ggtctggccctgagatacgttcttgaagccttacggaaaccgtttggatccaaaatgtat
tactttggaattgctgcactggatagattcaaaaacagacttaaagactaccctcagtac
tgtcaacacttggcttcaattgctcacttcttgcagtttcctcaccatttacaagagtgt
gtgcagtatatcgagtatggccaacagtcacgtgaccctccggtgaagatgcagggatcc
atcactacacctggaagcgtcgccctggcccacgctcaggctcagtcccagcagccgccc
agcctcaaagccccccagccgggccagcccagtacactggccaccaccaccaccaccaca
acaaccactgcagccaaaacaggcaccatctcaaggcccacgcagagcaccttcaagaag
gatatgcctccttccataaacactaccaacatcgacacgcttctggtggcgacggatcaa
accgaacggattgtagaacctccagagaatgtccaagagaagattgctttcatcttcaac
aacctttctcagtccaacatgacacagaaggtagaggagttgaaggaaacggtgaaggaa
gagtttatgccgtgggtgtctcagtacctagtgatgaagcgcgttagcattgagccaaac
tttcacagtctctattccaactttttggacacactgaagaacccggagtttgtcaagatg
gttctcagtgaaacttacaggaatatcaaggtgcttctaacctctgacaaggcagctgct
aacttctccgatcgctccctgctgaagaaccttggccactggttgggcatgatcacactg
gccaaaaacaagccaatcctctacacagacctggagctcaaatctctcttgctagaagcc
tatgtgaaaggccagcaggagctcctctatgtggttccctttgtggccaaagtcttggag
tctagcctacggagcatggtcttcaggcctcagaacccttggactatggccatcatgaat
gttctcgctgagctccatcaggaacatgacctcaagttgaatttgaagtttgagattgaa
gttctgtgtaagaacttgtctctggacatcaatgagctgaagccagggaacctgctgaag
gacaaagacaagctgaagaacctggaggagcagctgtctgcaccaaagaaagaagccaag
ccaccagacgaaatcctgccgcctcctaccacaggtgactttgttccgtttccagctcct
tctacaaccccggctgccaccaccaccacctgcactaccaccgggccgcccacgcctcag
ttcagttaccatgacatcaatgtctacgccctggcaggcctggctccacatatcaacatt
aatgtcaacatcgctctgctgcaggctcatcctcagctcaaacagtgcgtgcgtcagtct
gtggagcgagcggtccaggaactggtgcaccccgtggtggaccgctccatcaaaattgcc
atgacaacatgtgagcagatcatcaggaaggactttgccctggattcggaggagtctcgc
atgcgcgtagccgcccaccacatgatgagaaacctgactgctggcatggccatgatcacc
tgccgcgagccgcttctgatgagcatcgccaccaatctgaagaacagcttcgctgcggcg
ctcagggcgccgacgccacagcagagagaaatgatggaggaggctgcagccaggattgct
caggataactgtgaactggcctgttgcttcatccagaaaactgcagtggagaaagctgga
cctgaaatggacaagaggctggccacagagtttgagctgaggaagcacgcgcggcaggaa
ggccgtcgctactgcgaccccgtcgtcctgacctaccaggctgagcgcatgccggaacag
atcagactcaaggtgggaggagtggaccctaaacagctggctgtttatgaggagtttgcg
aggaacattcccggtttcttaccaagcaacgatctctcccaacccactggcttcctggct
caacccatgaagcaacaagcctgggccactgacgacgtggctcagatctacgataaatgc
atcacagacttggagcagcaccttcatgccattcctccagcgctcgccatgaacccgctg
acccaaggtctgcggaacctgctggaagccgtggctttggcacgaaactccagggacggc
attgctgccctgggcctcctgcagaaggccgttgaaggtctcctggacgccaccagtggt
gctgatgctgacctgctgcttcgctacagagagtgccacctgctggtgctgaaagctctg
caggatggacgggcctacggaccgcagtggtgcaataagcagattaccaggtgtctgatt
gaatgtcgggatgaatacaagtataacgtggaagcagtggagcttctgatcaggaaccat
ctggtgaacatgcagcagtacgatgtgcacctggcgcagtcgatggaaaatggactccac
tacatggcggtggcattcgccatgcagctggtgaagctgctgctggtggacgagcgcagc
gtgagccacgtcacggaggccgacctcttccagaccatcgagattctgatgagaacctgc
gcacactccagagccaacgcacccgaggggcttccccagctgatggatgtcgttcgctcc
aattacgaagccatgattgaccgggcacacggagggcccaacttcatgatgcactctggg
atttcccaagcttccgaatacgatgatcctccaggtctgagggagaaggcagagtacttg
ctgagagagtgggtcaacctgtatcactcggctgcagctggcagggacagcaccaaggct
ttttctgcctttgtcggccagatgcaccagcagggcatactgaagaccgacgacctgatc
acgcggttcttccggctgtgcacagaaatgtgcgtggagatcagctatcgtgcacaggct
gaacagcagcacaacccagcagctagcgtagccatcatcagagccaaatgttaccacaac
ctggatgcctttgtccggctcatagccctgctagtgaagcactctggagaggccaccaac
accgtgacaaagatcaacctgctcaacaaggtcctggggattgtcgttggagtgctgatc
caggaccacgatgtccgtaacacggacttccagcagctgccgtaccatcggatttttatc
atgctgctgttggagctcaacgcgcccgaacacgtcctggagaccatcaacttccagaca
ctcactgccttctgcaacacgttccacatcctgagacccaccaaagctcccggcttcgtg
tacgcctggctggaactgatctcccatcgcatcttcatcgccaggatgctggcgcacacg
ccccagcagaagggttggcccatgtatgcacagctgctgattgacctctttaagtatctg
gctcccttcctgaggaacgtagagctcaacaaacctatgcaaatcctctacaagggcaca
ctgagggtgcttctggtcctcctgcatgatttcccagagttcctctgtgattaccattat
ggcttctgtgatgttatcccacccaactgcatccagctccgcaaccttatcctcagtgcc
ttcccacgcaacatgaggcttccggatcccttcacgcccaacctaaaggtggacatgctg
agtgagatcaacatcgctccccgtatcctcaccaacttcacaggcgtcatgccgtctcag
ttcaagaaggatctggactcctacctgaagacgcgctcacctgtgactttcctgtctgag
cttcgcagcaacctgcaggtgtcgaacgagccaggaaaccgctacaacatccagctgatc
aacgcgttagtgttgtatgtcggcacacaggccatcgctcacatccacaacaagggcagc
accccgtccatgagcaccatcacacactctgcacacatggacatcttccagaacctggct
gtggacctggacactgaagggcgatacttgttcctgaacgcgatagccaatcagctgcgc
tacccgaacagccacacccactacttcagctgcaccatgctctacctgtttgctgaggcc
aacaccgaggccatccaggagcagatcaccagggttctgctggagaggctgatcgtcaac
agacctcacccctggggactcctcatcaccttcatcgagctgatcaagaatcctgccttc
aagttctggagtcacgactttgttcactgtgcgcctgagatcgaaaagttgttccagtcc
gtggctcagtgctgcatggggcagaagcaggcccagcaggtgatggagggcaccggtgcc
agctaa
DBGET
integrated database retrieval system
