Poecilia mexicana (shortfin molly): 106922403
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Entry
106922403 CDS
T08022
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03015
mRNA surveillance pathway
pmei03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106922403 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
106922403 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106922403 (cpsf6)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
106922403 (cpsf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
106922403
NCBI-ProteinID:
XP_014850281
Ensembl:
ENSPMEG00000001353
LinkDB
All DBs
Position
Unknown
AA seq
589 aa
AA seq
DB search
MADGVDHIDIYADVEEEFSQEPEYPPHEQIDLYDDVISPSANNGDAPEDRDYLDSLPAPG
GSEGGKSAPPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAIRSIGISDVLEIKFFENRAN
GQSKGFALVCVGSEASSRKLMDLLSKRELHGQNPIVTPCNKQSLSQFEMQSRKNCTGTQS
GQMSGEGKAGPPGSGSRGGFPMGSRSKGRFPGPPGPGNDRFPGPVGPGGPPPHFPGSGMR
PDLVSHHDGPLMEMNFNPFPPGGRNGSWHSRGGIQGPPRPPPGPPGPPGPPGPPPPGQGL
PPPLPGPPNRGDRPPPPVLFPTQFGQPPLGPLPPGPPPAGYVPPPGPPPPHQGPPPPGPF
PPRPPGPIGPPLALAPPPHLPGPPPGGPPPAPHVNPAFFPPPGGNNMPPNDSRGPPGPND
LYGRPPPYDSRDYGPGRGDMESSRGPLNEAEFEEIMNRNRAISSSAISRAVSDASAADYG
SAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSVSRRERSRERDHSRS
REKSRRHKSRSRDRHEDYYRERSRERDRHRERDRDRDREREREREYRHR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggaccatatcgacatctacgccgacgtcgaggaggaatttagccag
gaaccggagtaccctcctcatgagcagatcgatttgtacgatgatgtaatatccccctca
gccaataacggagatgctccggaagaccgcgactacctggactcgctccccgccccgggg
ggctccgaaggggggaagagcgccccgcccaatgtggtttacacctacacaggcaaaagg
attgccctgtacataggaaacctcacatggtggacgacagacgaagacctgacagaagct
attcggtcaataggcatctcagatgtgcttgagatcaagttctttgaaaaccgagccaat
ggccagtctaaagggtttgccctcgtgtgtgtcggttcagaggcatcgtccagaaagtta
atggacctgttgtccaagagggagctccatggacagaatcccatcgtcacgccgtgcaac
aaacaatctctgagtcagtttgagatgcagtctcgtaaaaattgcacaggtacccagtcg
ggccaaatgtctggggaaggcaaagccgggcctccgggctccggctcccgtggcggattc
ccgatgggcagccgcagcaaaggcaggttccctggaccccctggtcctggaaatgaccgc
ttccccggccccgtggggcccggaggcccgccaccacacttcccaggctcgggaatgaga
ccagatctggttagccaccatgatggccctctgatggaaatgaatttcaatcccttcccg
ccggggggcaggaacgggagctggcatagcagaggtgggattcagggacctcctcgtcct
cctccgggcccccctgggcctccagggcctccaggtcctccacctcccggccaaggcctt
cctcctcctctgccaggccccccgaatcgtggcgaccggcctcccccacctgttctcttc
cctactcagttcggtcagccaccgctcggacctctccctccaggccccccacctgcaggt
tacgtcccccctcctggtcctccaccgcctcatcagggcccgcctcccccaggacccttt
cctcctcggcctccaggccctattggacccccgttggctttggctccacccccacacttg
ccaggccctcctccaggtggaccaccaccagctcctcatgtgaaccccgccttcttccct
ccgcctggagggaacaacatgccccccaacgacagccgagggcccccggggccaaacgac
ctgtacggccggccgccgccatacgattccagagattacggtcctggacgaggagacatg
gagtcatcacggggccccctgaatgaggccgagtttgaggagatcatgaacaggaacaga
gccatctcctccagcgccatttccagggccgtgtctgatgccagcgcagctgattatggc
agtgctatagagactttggtgacggccatcagtctgatcaagcagtccaaagtttctgca
gacgaccgctgcaaagtcctcatcagttccctgcaagactgtctccacggcatagagtcg
aagagctacggctctgtatctagaagagaacgctccagagaacgcgaccatagccgctcc
agagaaaagagccggcgacacaaatcccgcagtcgagaccggcacgaggattattaccga
gagcgcagccgggagcgcgaccgccaccgcgagagggaccgggacagagaccgtgaacga
gagcgggagagggagtaccggcaccgctag
DBGET
integrated database retrieval system
