Poecilia mexicana (shortfin molly): 106922569
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Entry
106922569 CDS
T08022
Name
(RefSeq) collagen alpha-1(XXVII) chain B-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106922569
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmei00536
]
106922569
Glycosaminoglycan binding proteins [BR:
pmei00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106922569
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
GH131_N
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
106922569
NCBI-ProteinID:
XP_014850581
LinkDB
All DBs
Position
Unknown
AA seq
1649 aa
AA seq
DB search
MEPDNAPNSKLKATGVGGRALILWTVLVSICSVRFAQAQDVDVLQQLGLFGRRPGVPPPT
GTRSIPAGVIPVKSGFILTPRARLQVPLRTIIPASYDTSSLSLILSLSAHRFNSAFLFSV
LSKRKKVQLGVQFTPGNVFVHVGHKNSVSFDYDVYDGRWHNFAVAVRDRQVFLHTSCGEK
SLHGNLSSKKDQSLDAEGSFLLGKMSHNSVPFEGAICQFDIYPSAEAAHNYCDHIKKHCR
EADTYRPVFPPMLPLLSDPDITLTHATSPSLTERSLATEYAVVSISPPANVGLENPPKFS
SPTVAASLRIINPTDQKHFVKNTNQRDSESSGASGKSLLVPVSVRPSANLRTTALSTQEY
VPHERELTTVAPKKPEPEVTSDFKPTTLPAVTPVATDGFQTFDLEPTQFSLLAGPPGLKG
EPGPPGPQGFPGLPGIPGKRGPRGPPGSHGNPGRPGPPGVKGQKGDPGMSPGQARKGQKG
EPGMIGPPGPPGQDGQKGQKGFSGPCGHPGEPGGQGDDGSPGAKGYPGRQGLPGPVGKTG
PKGISGHIGIPGLFGFSGPDGERGIPGVRGKKGKMGRPGFPGDFGERGPPGPDGNPGELG
APGPCGVTGLIGDMGPSGMMGLPGFPGLKGVPGNPGVAGLKGDKGDVGLTGEQGDCGFQG
DKGRRGSPGLPGPRGKPGPQGKPGDKGPDGIPGPLGSEGFPGDIGPPGQNGLEGPKGKEG
TRGLPGPTGAPGLQGDEGPVGPAGPAGAEGRPGRQGFPGPTGSEGPKGETGITGEVGKLG
ERGLPGFIGPIGEAGMAAEKGDRGKTGVPGPPGEPGPMGHSGLPGETGPPGLEGIPGPTG
SRGSAGIRGPKGRRGPRGPDGPLGAKGSAGVKGPDGPPGKLGLPGEMGKLGEPGEAGPKG
FPGIPGPSGPPGAKGIVGEPGSSGPAGTIGPLGAIGPTGPAGNDGEKGPPGESGEKGSVG
SPGSIGEQGLIGQRGETGIDGEAGLSGPHGTLGEKGDGGPDGAGGDRGEIGLKGKEGRPG
PPGLVGVRGQEGTPGKIGERGKPGEKGSKGQQGHLGESGPIGEHGEPGFIGQKGARGTTG
PVGVPGRMGQQGDPGIAGYEGYVGPPGPLGPPGSKGEKGEQGDDGKVEGLPGPQGDRGSP
GDRGERGEPGDPGRIGEIGFNGPRGEAGAPGLPGHPGLKGQPGLKGSKGDQGPKGKSGVT
GASGNRGPPGPQGPSGPHGVLGREGLEGPPGMDGLPGKDGSNGVKGDQGEDGEVGLPGKP
GMPGGKGVTGLSGSQGSFGSKGERGLPGQVGPAGKRGFVGVMGLPGKPGDLGAKGQTGDS
GEQGYPGVLGMFGPKGPPGDIGLAGIQGPKGPRGLMGAVGALGPVGIIGPSGHPGPQGDK
GSRGETGLPGPNGSPGPRGPPGPPGLPSSEHLLRNEALSPALEIIMEPPAVLQQENYQSM
DLPMLDQGTEILKTLHHLSTLIHSLKNPLGTRRNPARTCLDLYNCEQRMYDGAYWIDPNL
GCSADSIEVMCNFTGGGQTCLKPITVSKLEIGVGRIQMNFIHLLSTEAVQHIIIHCLNAS
VWAEGPTQQPSPRSVSFKAWTGEEIQAGDLLEPQIPRDDCCIRDGRWHQTHFIFQSQDPT
LLPIIDVHNLPTTEPGARFHLEVGPVCFL
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atggagccggacaatgccccgaactccaaactcaaagccactggagtcggggggagagct
ctgattctttggactgtactggtttctatctgttctgtgaggtttgcacaagcacaagat
gtggacgtcttgcagcagctggggcttttcgggcgaaggccgggtgtgccaccaccaaca
gggactcgctccattcccgccggtgtcatccccgttaagtccggcttcatcctcactccg
agggcccgcctccaggtgccgctccgcaccatcatccctgctagctacgacaccagcagc
ctctccctgatcctcagcctctctgctcatcgcttcaacagcgccttccttttctctgtt
ctgtctaagagaaagaaagttcagctcggagtgcagttcacaccggggaatgtttttgta
cacgtggggcacaagaactctgtgagttttgactacgacgtctacgatggacggtggcat
aattttgctgtggctgtacgagaccgtcaggtatttttgcacacatcctgtggtgagaag
agcttacatggaaatttgtcctcgaaaaaggaccagagcctggatgcagagggctccttc
ctgctgggcaaaatgagccacaactccgtgccgtttgaaggtgcaatctgtcagtttgac
atttatccctcggctgaggcagctcataactattgtgatcacattaagaaacactgcaga
gaagctgacacatatcggcccgtttttccacccatgctacctctactctcagacccggat
attactttaactcatgcaacttcaccatcactgacggagagatctttagctacagaatat
gctgttgtgtctatttctccaccagctaatgttggattggaaaacccgcccaaattttca
tctccgactgttgccgcatctcttcggatcataaatccaacggatcagaaacacttcgtc
aaaaacacaaatcagagggatagtgagtcttcaggagcttctgggaaaagtttacttgtg
cctgtctccgtcagaccgtcggcaaatctcaggaccacagccctttccactcaggagtac
gttccccatgaaagggaactgaccacagtagctccaaagaaacctgagccagaagtgacc
agcgatttcaaaccaaccacactccctgcggtgactccagttgcaacagatggctttcag
acatttgacctggagccgacccagttctcactgctggctggaccacctgggctgaaggga
gaaccaggacctccgggtccccaaggatttccaggattgccaggaatcccaggaaaaagg
ggccccaggggccctcctggttctcatggaaaccctggtcgacccggaccgcccggagtg
aagggacaaaaaggagatcctggaatgtcacctggtcaagcccggaaaggacaaaaagga
gaacctggaatgatcggcccacctggaccgcccggccaagacggacaaaagggacaaaaa
ggcttttctggtccttgtggtcatccgggcgaacctggtgggcagggagatgacggaagc
cctggggccaaaggctatcctggcaggcagggtttgcctggacctgtaggaaaaactgga
ccaaaaggcatcagtggtcacattggcatcccggggctttttggcttttctggtcctgat
ggagagagaggaattcctggtgtccgtgggaagaagggcaagatgggtaggccggggttt
cctggtgactttggagagcggggaccgcctggccctgatgggaacccaggtgagctggga
gccccaggtccatgtggagtcactggcctcattggagacatgggccctagcggcatgatg
ggcttaccggggtttccaggactcaagggagtacctggaaatccaggggtagcaggactg
aaaggtgataagggggacgtgggcttaacgggagaacagggcgattgtggattccaaggg
gacaagggccgccggggttcccctgggttacctggtcctcgtggaaaacctggaccacag
ggcaaacctggagacaaaggccctgatggcattcctggtcctcttggttcagagggcttc
ccaggtgacattggcccaccaggacaaaatggtctagagggaccgaagggaaaggaaggg
acaagaggtttgccaggtccgacaggagcacctggacttcagggtgacgaggggccagtt
gggccagctggacccgctggagccgagggcaggcctgggaggcagggattccctggaccg
acgggctcagaaggacccaagggcgagacggggataaccggcgaggtcggcaagcttggc
gagaggggactgccaggctttatcggacctattggggaggcaggaatggctgcagaaaag
ggggatcgagggaaaacgggtgtccccggacctccaggtgaacctgggccgatgggtcac
tctggactacctggagagacaggcccaccgggactggaagggattccaggcccaactggt
tcacgaggatctgctggcatcagaggacccaaaggcaggagaggtccaagaggtcctgat
ggtccactgggggcaaaggggtcagcaggggtcaaggggcctgatggtccaccaggaaaa
ttgggcctccctggggaaatgggaaagcttggtgagccaggcgaagccgggccgaaggga
tttccaggtatcccgggcccctcaggaccacctggagccaaaggaattgtaggagaacca
gggtcatcagggccggcaggaacgatcgggccactgggggcaattggaccaacgggacct
gctggaaatgatggggaaaaagggccgccgggtgaatctggagagaagggttctgttggc
tcgcctggcagcattggggagcagggcttgattggccagagaggtgagacaggcattgat
ggggaggctggactaagtggaccacatggtaccttgggcgagaaaggagatggcggtcca
gatggggccggtggggacagaggtgaaattggcctgaaaggaaaggaaggcagacctggt
cctcctggacttgtgggggtcagaggtcaggagggcacgcccggcaaaatcggggaaaga
ggaaagccaggagaaaaggggagcaaaggtcagcaaggtcacttaggtgagagtggacca
atcggggagcatggagagcctgggtttattggacagaaaggggcaagaggaaccaccggc
cccgtgggtgttcctggacgaatgggccaacaaggtgatccaggcatagcaggttatgag
ggttatgtgggaccaccaggaccgcttggaccccctgggtcgaaaggtgaaaagggtgaa
cagggagatgacggcaaagtagagggtcttccaggtccccaaggtgacagaggttctccc
ggagacagaggggaacgaggagagccaggtgacccaggacgcataggtgaaattggtttc
aatgggcctagaggtgaagcaggtgcaccaggtcttcctggacatcctgggctgaaggga
caaccaggtctgaaaggatccaaaggtgatcagggtcctaaaggaaaatcaggcgtaact
ggagcatctgggaacagaggaccaccaggcccacaggggccgtctggcccacatggggtc
ctgggcagggagggactggagggcccacctgggatggatggcttacctggtaaagatgga
agtaatggagtcaagggggatcaaggagaggacggagaagttggtttacctggaaaacct
gggatgccaggcggaaagggggtgacgggactttcaggaagccaaggctcctttggctca
aagggggagaggggtctgccaggtcaggtgggcccagcggggaagagaggttttgtcggt
gtgatgggattaccgggaaagccaggagacctgggagcaaaaggccaaacaggggatagc
ggtgagcagggctacccaggagtactgggcatgttcggcccaaagggacccccaggggac
attggcctggcaggaatacagggaccaaaaggaccgcgaggattgatgggtgcggtggga
gccttgggccctgttggcatcattgggcccagcggtcatccaggacctcagggtgacaaa
ggaagtcgcggggagacggggttaccaggaccaaatggatctcctggtcctcgaggacca
cctgggccaccaggccttccaagttctgagcatttactaagaaatgaagctctcagtcct
gctttggaaatcatcatggagcctcctgctgttttacagcaagagaattatcaaagcatg
gacttgcccatgttagaccaaggcacggagatcttgaagacgcttcaccacctcagcaca
ttgatccacagcctgaagaacccgctgggaaccagacgcaacccggctcgaacctgcctg
gacctttacaactgtgagcagcggatgtacgacggagcttactggatcgatccaaatctt
ggatgcagtgcagacagcattgaagtgatgtgtaacttcactggtggaggacaaacttgt
ctgaaacctattacagtttcaaagttggaaatcggagtgggtcgaatccagatgaatttt
atccacctgctgagcaccgaggctgtgcagcacatcataattcactgcctcaacgcctct
gtgtgggccgaaggtcccacccagcagccttcacccaggtctgtaagcttcaaggcctgg
accggggaggagatccaggcaggggaccttctggagcctcagatacccagggacgactgc
tgcatcagagacggacgctggcatcagacccacttcattttccagagccaagacccaact
ttgcttcccatcatagatgtgcacaatttgccaaccacagagcccggcgcgcggtttcac
ctcgaggtcggacctgtttgcttcctgtag
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integrated database retrieval system
