Poecilia mexicana (shortfin molly): 106922664
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Entry
106922664 CDS
T08022
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106922664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmei03009
]
106922664
Ribosome biogenesis [BR:
pmei03009
]
Eukaryotic type
Pre-60S particles
RNases
106922664
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
REX3_middle
TBCA
KIX_2
Motif
Other DBs
NCBI-GeneID:
106922664
NCBI-ProteinID:
XP_014850751
Ensembl:
ENSPMEG00000018012
LinkDB
All DBs
Position
Unknown
AA seq
1128 aa
AA seq
DB search
MFPSSGLFIHISCPFSLRGLCERPHCLYKHAAESRETFGGLYKSPVVDLTGDQCDSNFTT
VIDNSLHELERLDKQIESVRYEVEQEQRRLSSYQTNQADKSSNKLSTKFETNLSYGFSSS
KNHKSHVQAQKYVVDNSKPRTDLEYDPMSNFSAALHSCSSSGKEAKSRPDRKSSRSFGEK
PSTHQAQMYRPRSPEILDDDSTEDGVLVIDVSLSPDKTLDQTQHTADSGKSSQNTERDMK
EIKAVNVYLDFQPQMVKTKVVNASSCDDADKVPEIHPLSSTLDKTQDYSNDERNVVDLTG
CLEELERECENTGFQSPERKNKWIEPGGFSFPSDQPSNPLMEQTYKAQKKDLKSQNSFVC
KRSYPNTQFKQTSITDQDKLKVQSQLCVLQNGEKTKMKAFTNQKQVEAAQGSSQIQIHDV
RSVNPHSRSESMEQLLQEEDEAVIIIDSSPEDEDHEDEVNYSELSESDPMEECYRIFMEA
NTEEKGSEEQGSASIEAEVETPEVNAANQNLTGRKRLAHEAKNLEQPLAKMRPQPQVLVP
LREPGGSVSRLSICAKVQEVQYRASAAPAKLGQNLLSSVSQKKPETQTVPSTPTLKNLQV
YPGQNAYLSCVPLGTAVIEVGSDLHLILPQGHFPLSATSSSSPVSSVLTPMSRVHPNPTA
VRQTTSPAAVSALPKYRSTAPLLIAAPARRPAASTAFGSSVQSTVGISTASQAVTQTAVK
PLPVKRKLKQQSEAAKDKVPHDVRQRYVNMFTEEFLKTTADVNEAFEKALTEEKSVYNRS
VNKLKYLSIAVNALKRLKNQSATAKKEKQTQSQRPKGNIPFNQRKIKENAGDLVLYEILK
GYTLTDEQMIENNYPVQHPEKPGSAVLFSDKKVSTDSLKRICCRCGATYSVGKTGKHLRT
EECNYHYGKGVTNRVPGGVETRYSCCQGVMGAPGCQMFKLHVHDYLSLDGFVSTAPRRPS
DSSCPGVYSLDCEMCYTVQGLELSRVTVISSSLQVVYDTFVKPDNEVIDYNTRFSGISEE
DVKGNHTSLKEVQDTLLSFISADTILVGHGLETDLCLLKLLHGTVVDTSVVFPHRLGPPN
KLSLNSLTAEYLRRIIQESVCGHDTGEDAAACMELMLWKMKEDGKLKK
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgtttccttcctctggtctttttattcacataagctgtcctttttcgctacgtgggctt
tgtgagaggcctcattgtttatacaaacacgccgcagaatcgagggaaacgtttggtggc
ttgtataaatcacccgtggtggatttaacaggggatcagtgtgacagcaattttacaaca
gttatcgacaactccctgcatgagctggaacgactcgataagcagattgaatctgtaagg
tacgaagtggagcaggagcagcggcggctctcaagctatcagactaaccaggcggacaaa
agcagcaataaactctcaacaaagtttgaaacaaacctttcttatggattttcttctagc
aaaaaccataaatcacacgttcaagcacagaaatatgtggtcgacaactccaaaccaagg
actgatttagagtacgatccaatgtccaacttttctgctgctttgcattcttgcagctcc
tcaggaaaggaagcgaagagccgaccagacaggaagagctccaggtcttttggtgaaaag
ccgtccactcatcaagcccagatgtaccgaccgcgatccccagaaatcctcgacgacgac
tctactgaagatggtgtcctggtcattgatgtttctctgtcacctgacaaaacgttggat
caaactcaacatactgctgactcaggaaaatcctcccaaaatacagaaagagacatgaag
gagattaaggcggtgaatgtttatcttgactttcaacctcagatggtaaaaactaaggtg
gtaaatgcttcttcctgtgatgatgcagacaaagtccctgagatccatcctctgtcttct
actttggataaaacacaagattacagcaatgatgagaggaatgtagtcgacttaaccgga
tgtttagaagagcttgaaagagagtgtgagaatactggtttccaatcccctgaaaggaaa
aataaatggattgaacctggaggtttttccttcccctcagatcaaccaagcaatcctctg
atggagcagacttataaagctcagaaaaaagatttaaaatctcaaaattcatttgtttgt
aaacgatcatatcccaacactcaatttaaacaaacctcaataacggaccaggacaaactc
aaggttcagagccagttatgtgttttacaaaatggtgaaaaaacaaagatgaaagctttc
accaaccagaaacaagtggaggcagcacaaggcagcagccagattcagattcacgatgtc
agatctgtgaatccacacagtagatctgaatcaatggagcagctgctgcaagaggaagat
gaagcggtgataataatagactccagtcctgaggatgaagatcacgaagatgaggtcaat
tactctgagctttctgaaagcgacccaatggaggaatgctaccggatcttcatggaggca
aacaccgaggagaagggaagcgaggagcagggtagcgcgtcgattgaagccgaagtggaa
acaccggaggtgaacgcagcaaatcaaaatttaaccgggaggaagaggttggctcacgaa
gccaagaacttggagcagccactggccaagatgagacctcagccgcaggttttggttcct
ctgcgggagcctggaggttcagtgtcccggctgtccatctgtgctaaggtccaggaggtt
cagtaccgggcctcggctgctccggctaaactgggccagaatcttctttcttcagtgagt
cagaaaaaaccagagacacaaaccgttccttcaactccaaccctgaaaaaccttcaggtg
tatccaggtcaaaatgcttatctgagctgcgtccctctgggaactgcggttatcgaagtg
ggaagcgaccttcacctgatcctgccgcagggccacttccctctctctgccacctcgtcg
tccagcccagtttcatcggttctgactccaatgagtcgggtccatccaaaccctaccgca
gtcaggcaaacgacctctccagctgcggtttcagctctgcctaaatatcgctccacagcg
cctctgctcatcgcagctccggcgcgacggcccgcagccagcacagctttcggatcgtct
gtccagtcaacagtcggcatttccacagcttctcaagctgtgactcagacagctgtcaag
ccacttcctgtgaaacgaaagctgaagcagcaaagtgaggcagcgaaggacaaggtgcct
catgacgtccgccagcgttacgtgaacatgttcactgaggagtttctcaaaacaacagct
gatgtcaatgaagcttttgagaaggccctgacagaggagaagagtgtgtacaatcgcagt
gtgaacaaactgaaatacctgagcattgcagtgaacgccctcaagagactcaagaaccaa
agtgctactgctaaaaaggaaaaacagacccagagtcaaagaccaaaaggcaacatccca
tttaaccaaaggaagattaaggaaaatgcaggtgatttggtgttgtatgaaatcttgaag
ggttacactttgactgacgaacaaatgatagaaaacaactatcctgtccagcacccagaa
aaacccggttctgctgttcttttttctgacaagaaagtgagcacagactctctgaaaagg
atctgctgtcgctgtggcgccacctactctgttggcaaaacggggaaacacctcagaaca
gaggagtgcaactaccactacgggaaaggagttacaaaccgagttccaggtggggtggaa
actcgctacagctgctgtcagggggtcatgggagcgccgggatgtcaaatgtttaagctg
catgtccatgattacctcagcctggatgggtttgtatctactgcacccagacgcccctca
gactccagctgtcctggagtttactccttggattgtgaaatgtgttacactgttcagggc
ctggagctgtccagagtgacagtgatcagctccagtctgcaggtcgtctacgacacgttt
gtcaaacctgacaatgaggtcatcgactataacaccaggttttcaggcatcagtgaggag
gatgtgaaaggtaaccacacctccctcaaggaggtccaagacactctgttgagcttcatc
agtgctgacactattctcgttggacatggcctggaaacagacctttgtttactgaagctg
cttcatgggacggtggtagacacttcggtggtcttcccccatcgtctaggtccgcccaac
aagctgagcctcaatagcctcaccgctgaatatctcaggaggattattcaggagagtgtt
tgtggccacgacactggagaagacgcagctgcctgcatggagctcatgctgtggaagatg
aaagaagatgggaaactgaaaaaatga
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