Poecilia mexicana (shortfin molly): 106923701
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Entry
106923701 CDS
T08022
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106923701 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106923701 (edc4)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106923701 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
106923701 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_EDC4L
WDR55
SYCP2_ARLD
Band_7
Motif
Other DBs
NCBI-GeneID:
106923701
NCBI-ProteinID:
XP_014852411
Ensembl:
ENSPMEG00000005379
UniProt:
A0A3B3WMZ5
LinkDB
All DBs
Position
Unknown
AA seq
1385 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGSSADMQPSDDQRKLSFNGELNGLLGAGLLGTSIS
ESTRPISTDGSVQESQRICLTGDDGSTCIPIVLNNVEIVASQDSGINSKARGSNKVKIQP
VAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSLDFSERSLLKGFTGAVTDLA
FAHLDSSLLGCVDEAGNLMVWHLTLTRSKILDQIVVHIQRPEDAPLNSHRRLIWCPYILE
DNEENQDDTSQTLALLHEDGAEVWDLEVLRANNSSWPVDASEIKDGLIIVKGHTQRVSEG
ALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHEGRPLSCLLFCDNHKRQDP
EVPFWRFLITGADQNQELKLWCTVSWTCLQTIRFSPDPFNSTVLPSLKASLDLAAEYLIL
TDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVTHSRLRHTEVLPAEEE
SESMSTEGTQGPAESKSGIQIKLYCVHTKSLQDVQIWFQPNAGFNTPGFIPHSDSQDGFA
GFPDHLTDQSSDKDSGSGSQSDLRKIPSLPVPSDFLSNSGASGGPMPKLMTPDAFMTPST
SVPASPGSSASSLTIVTAISSNSDSTNRAMDDVSQSPIRGENNGGSSLGLSVTTSSPRAA
PAVLLPGLENLQALGSPSGPLGLDSPQVPDSPLLLPLASPTRARSPDVISSASTVMSQDM
PEIATQTLQLQRSHGLEALQLPALQTDSMASAACALHLLTSPRAATNNGLLPLELGGADG
SSMADDSESRLGNKPSLLENTLSQENTGVSGGSSDGSVSHTSWPAAPDITRETRNSLRDN
GLGECLREESSERRLSSPYHRRSYHLVQNDSQDVGADQSDPDDEIASLASSSGNCGSRSS
HRMPVKDWKSSPRGSPKLKRKLKKDDNESSQPRHMDPGQFHTETQDELLMLLRSQQRELA
DLCSLVETMPGTIMAQVEHVLMKHQEQEQRRLDRALAENQSRQQQLHEQLSQQLSHALST
ALTNRMDKVLREELKKAVPQTISKSLEPVTGQLNNSIAAKMAAVEVTIKDIVIKVVKSKN
TTDAMGRAAAEAMQGPIQAAYKDVFQSTVLPVFERGCQSMFQQINDSFKQGTQDYIQQLE
AHLKSRKQREQEARDPVIGQLQQAIDGFQSCTDQLASSVSTAVRAEVQHQMQVVVGNLQE
SILSHLQRIVKGEVSLAMREQQAVVTSSIMQAMRSAAGTPVPTAHLDYQSQQANILQLLQ
QGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQTPCPLSQPVLLSLIQQLSSNLATRS
QLKISYLEDAVMNLDHSEPLTRDHMSSVLAQVRSKLLAFLQQDPHSPLSKRARGLLLMLH
GVVNH
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaactctaacatagacatcgagggagcgacccagcacctccgggacatcctg
aagctcgaccgtccggggagcagcgccgatatgcaaccaagcgacgatcagagaaaactg
tccttcaacggagagctgaacggtttactgggagcaggacttctggggaccagcatatct
gaatccaccagacccatttccactgacggcagcgtccaggagagccagaggatctgcctg
actggtgatgatgggagtacctgcatccccatcgtcttaaacaacgtggagatcgtggcg
agtcaggactcaggcatcaacagcaaggcgcggggcagcaacaaggttaaaattcaacct
gtcgccaagtacgactgggagcataagtattattacggccgactgatagccgtgtccaac
tccttcctcgcctacgccatcagaggagccaacaaccacgccatgattcgcgtgctgagt
ttggatttcagtgagcgctccttgctgaagggcttcactggcgccgtcacggatctcgct
ttcgcccacctcgactcctctctgttgggctgcgtggatgaggcgggaaacctgatggtc
tggcatctcacactcacgagaagcaaaatactggatcagatagtggttcatattcagcgt
ccagaagacgctccactgaactcccacagacgcctcatctggtgcccttacatcttggaa
gacaacgaggagaatcaggacgacaccagccagacgctggctctcctgcatgaagatggg
gctgaggtttgggacctcgaagttttgagagccaataacagcagttggccagttgatgcc
tcagaaatcaaagatggcctcattatagttaaaggacacacacagagagtcagtgaaggt
gctctgtcccctgatgggaccgttttggccacagcgagccacgacggttacatcaagttc
tggcagatctacatagaaggaggacaagataagcccagatgtctccatgaactccgacct
cacgaaggacgtcctctctcctgtcttctcttctgtgacaaccacaagcggcaggaccca
gaagttccgttctggaggtttctcataactggagcagaccagaaccaggagttgaagctg
tggtgcacagtttcctggacctgcttgcaaaccatcaggttttctccagatccattcaac
tctacggttcttcccagtctcaaggccagtttagatcttgctgctgaatacttgatcctc
actgatgtgcaaagaaaggtcctctatgtgatggagctacggcaggacctggagaagggc
aaagcgagcttcacggccgtgtcggagttcctgctcacccaccctgtgctcagcttcggg
gtgcgcgacgtgacccacagccgcctgaggcacaccgaggttctgccagcggaggaggag
agcgagagcatgtcgacagagggcactcaaggacctgcagagtccaaatctgggatccaa
attaaactctactgtgttcacacaaagagtttgcaggacgtccagatctggtttcagccc
aacgcggggttcaatacgccgggttttattccccactctgactcccaagatggttttgct
gggtttccggaccacctcaccgaccagagctccgacaaagattctggaagcggctcgcag
tccgacctgaggaagatcccctcacttcctgttccctctgatttcctgtccaactctggg
gcatccggcgggccgatgcccaagctgatgactcccgacgccttcatgacaccaagcact
tcggttcctgcgtctcctggcagcagcgccagcagtctgactattgttacagccatcagc
agcaactctgactcgacaaatagagccatggacgatgtcagtcagagtcccatcagagga
gaaaacaacggcggcagcagtttgggactctctgtcaccaccagcagtccgagggctgca
cctgcagttctgctgcccggactggagaatctgcaggctctgggttcccccagcggccct
ctgggcctcgactcgcctcaggtcccagattctcctctgctgctgccgctggcctcgccg
acccgggcccgctccccagacgtcatctcctccgcctccaccgtgatgtcgcaggacatg
ccggagatcgcgacgcagacgctgcagctgcagcgcagccacggcctggaagccctgcag
cttcctgcgttgcagacggacagcatggcctccgctgcatgtgctctgcacctcctgaca
tcgccgcgcgccgccaccaataacggtttgttgccccttgaactcggaggtgctgacggc
tcgtcgatggcggacgattcggagtccagactcggtaacaaaccgtctcttctggagaac
acgttgtcgcaggaaaacactggggtcagtggagggtcgtcggatggtagcgttagccac
acgtcatggccggcggctccagacatcaccagggaaaccaggaacagcctcagggacaac
gggctgggagaatgtttgagagaggagtcaagcgagcgccgtttgagctctccctaccac
cggcgctcctaccacctcgtccagaacgacagccaggatgtcggcgctgaccagagcgat
cctgatgacgagatcgccagcctggcttcgtcctctgggaactgcggctctcgctcctct
cacaggatgccggtgaaagactggaagagctcgccacgaggctcaccgaaactgaagagg
aaactcaagaaagatgacaatgaatcttctcagcccaggcacatggatcccggtcagttt
cacacagagactcaagatgagctcctgatgctgctgcgcagccagcagagggagctagcg
gatctgtgttctctggtggagaccatgccgggaaccatcatggcgcaggtggagcacgtt
ctgatgaagcaccaggagcaggaacagcgcagactggaccgagctctggccgagaatcag
agccgccagcagcagcttcacgagcagctgagccagcagctgagccacgccctcagtacg
gcgctgaccaacaggatggacaaagtcctgagagaggaactaaagaaagcagttccgcaa
actatttctaagagtctggagccggtgacggggcagctgaacaactcgatcgccgctaag
atggccgccgtggaggtcacaattaaggacatcgtcatcaaagtggttaaatccaagaac
actacggacgccatgggccgggccgcggcggaggccatgcagggccccatccaggccgcc
tacaaagacgtcttccagagcacagtgctgcccgtgtttgaaagaggctgccagtccatg
ttccagcagatcaacgacagcttcaagcagggcacgcaggactacatccagcagctggag
gcccacctgaagagtcggaagcagagagagcaggaggcgcgggaccccgtgattggccag
ctgcagcaggcgatcgacggcttccagagctgcaccgatcagctggccagcagcgtctct
accgccgtacgagccgaggtccagcaccagatgcaggtggtggtggggaatctgcaggag
tccatcctgagccacttgcagcgcatcgtgaaaggcgaggtgagcctggcgatgagggag
cagcaggccgtcgtcacctccagcatcatgcaggccatgcgctccgccgccgggacgccc
gtccccaccgcacatctggactaccagtcgcagcaggctaacatcctgcagctgctccag
cagggccagctcaaccaggccttccagcaggctctgtctgcgacggacctgaacctggtt
ctgtacgtgtgtgagaccatcgactcccagcaggtgttcggccagacgccatgccccctg
agccagccggtgctgctgtcgctgatccagcagctgtcctccaacctcgccacgcgctcc
cagctcaagatcagctacctggaggacgcagtgatgaatctggaccacagcgagccgctg
accagggaccacatgtcgtcggttctggcccaggtccgatccaaactgctggccttcctg
cagcaggacccgcacagcccgctcagcaagcgggcgcgcggcctgctcctgatgctgcat
ggagtcgtcaaccactag
DBGET
integrated database retrieval system
