Poecilia mexicana (shortfin molly): 106927375
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Entry
106927375 CDS
T08022
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03013
Nucleocytoplasmic transport
pmei03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106927375
03015 mRNA surveillance pathway
106927375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106927375
Enzymes [BR:
pmei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106927375
5.6.2.5 RNA 5'-3' helicase
106927375
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106927375
mRNA cycle factors
Common to processing body (P body) and stress granule
106927375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
nSTAND3
ATPase
Helicase_RecD
DEAD
AAA_16
UvrD_C_2
UvrD-helicase
SRP54
AAA_22
Motif
Other DBs
NCBI-GeneID:
106927375
NCBI-ProteinID:
XP_014858393
Ensembl:
ENSPMEG00000011443
LinkDB
All DBs
Position
Unknown
AA seq
1107 aa
AA seq
DB search
MSVEAYGPNSQTLTFLDTEESELLGADTQGSEYDFIDFTLPSQTQTQGQTHSQLDNQVNG
SDVVLQNGDDPVVKASQLLAELNFEEDEEDAYYSKDLPLHACCYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQENITIRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVLIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGTGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMESMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGTKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGGKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFNKPRKLVN
AINPGGRFMSTAMYDAREALIPGSVYDRSSNGRPSNVYFQTHDQIGMICSGLGPMSSMNI
PIPINLVMPPIPSPGYLGQLNGPSGGRGESTKNKSASTGGSGTRGARQRNRGDVGIDGVQ
HGGHMTGSQASQDQGSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQ
FDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgaactcgcagaccctgacgttcctggacaccgaggag
tcggagctgctgggagcggacacccagggctccgagtacgacttcattgattttaccttg
ccaagccaaacgcagacgcagggccagacccacagccagttagataatcaggtcaacggt
tcggatgttgtgctgcagaatggagatgaccctgtggtgaaagctagccagctccttgca
gaattaaactttgaggaagatgaggaggatgcttactatagcaaggacctcccattgcat
gcctgctgttactgtggaattcacgatccagcctgtgtggtctactgcaacaccagcaag
aaatggttctgtaatggccgtgggaatacatctggcagccacatcgtgaaccacctggtg
agggccaagtccaaggaggtgaccctgcacaaagatgggcctctgggagagacggtgttg
gagtgctacaactgtggctgccgcaacgtcttcttgctgggcttcatcccagccaaggcc
gactcagtggtggtgttgctgtgcagacagccgtgtgccagtcagagtagcctgaaggac
attaactgggacagctcccagtggcagccactcatccaggaccgctgcttcctgtcttgg
ctggttaaaatcccctcagaacaggagcagctccgggcccggcagatcaccgcccagcag
atcaataagctggaggagctgtggaaggaaaatcccactgctactctggaggacctggag
aagcctggagtggacgaggagccacagcacgtcctcctgcgttacgaggatgcctatcag
taccagaatatctttggtcctcttgtaaagctggaggctgactatgataagaaactgaaa
gagtcacagactcaagaaaatataacgattagatgggacctgggcctgaataaaaaaagg
attgcttatttcacccttcccaagactgactctgatatgcgactaatgcagggtgatgaa
atctgcctcagatataaaggagacctggcccctccatggaaaggcattggacatgtcatc
aaagttcctgacaactacggcgatgagattgccattgagcttcggagtagtgccggagct
ccggtggagatccctcataacttccaggtggactttgtgtggaagtccacctcctttgac
aggatgcagagcgccctgaaaacatttgctgtggatgagacttcagtttctggctacatc
tatcacaagttgctgggacacgaggtggaggacgtgctcattaagtgccagctgcctaaa
cgcttcactgctcaaggcctgcctgacctcaaccactctcaggtctatgctgtgaagaca
gtgttgcagcggcccctcagtctgatccagggtccccctggcacagggaagacggtcacc
tccgccaccatagtgtaccatctggctaggcagggaaccggaccagtgctggtgtgtgct
cctagtaacattgctgttgatcagctgactgagaagattcaccagacagggctgaaggta
gtgagactttgtgccaaaagcagggaagctattgattctccggtgtccttcctggctctc
cacaaccagactcggaacatggaaagcatgccagagctgcagaaactccagcagctgaag
gatgagaccggagagctgtcgtcctctgacgagaagcgctacagagctctgagacgcact
gctgagcgggagctgctcatgaatgccgatgtgatctgctgcacgtgtgttggagcagga
gatcctcgtctggctaaaatgcagtttcgatctatcttgattgatgaaagcactcaggcc
acagaaccagagtgcatggtgccggttgtccttgggaccaaacagctgattctggtgggg
gatcactgccagctaggacctgtggtgatgtgtaagaaggcagcaaaagcaggcctgtcc
cagtctctgtttgagcgccttgtggttctgggcatcaggcctatccgtctgcaggtccag
taccgcatgcacccagccctcagcgccttcccctccaacatcttctatgagggctccttg
cagaatggagttactgctgctgatcgggtgaaaaaaggcttcgatttccagtggccacag
ccagacaagcccatgttcttctatgtcacccaaggccaagaggagatagcgagctctgga
acatcctatctgaacagaactgaggctgccaatgtggagaaaataaccacaaggttactg
aaggctgggggtaaacccgaccagattggcatcatcactccctatgaaggacagcggtcc
tacctggtccagtacatgcagttcagtggctccctccataccaagctctaccaggaagtg
gaaatcgccagtgtggatgccttccaaggcagagagaaagatttcatcatcctctcctgt
gtgagagccaatgagcaccagggcattggcttcctcaatgaccccagacgtctcaacgtg
gcgctcaccagggcccgatacggagtgatcattgtggggaatccgaaggccctgtccaag
cagcctctgtggaaccacctgctcaactattacaaggagcagaaggttctggtagaaggc
ccattgaacaacctgagagagagcctcatgcagttcaacaagccacggaagctggtcaac
gccatcaacccgggtggccgcttcatgagcacagccatgtatgatgccagggaggcgctg
attcctggctctgtttacgaccgcagcagcaacggccgaccttccaacgtgtacttccag
actcatgaccagatcggtatgatctgctctggactcggtccaatgtcgtccatgaacatt
cctattcccatcaaccttgtgatgcctcctatcccttcacctggttatttaggacagctg
aatggcccctctggaggtcgtggtgaaagcacgaagaataaatcagccagcacaggcggc
agtggaactcgaggtgctcgtcaaagaaaccgtggagacgtgggaatagacggagttcag
cacggaggtcacatgactggcagccaggctagccaggaccagggctcccagccgttctcc
caggggcccctcacacaaggctacatcagcatgagtcagccctcccagatgagccagccc
gggctctcccagcctgaactgtcacaggacagttacctaggagatgaattcaagtcccag
tttgatgtggctctgtcccaggactccacataccagggggaacgggcctaccaacatgga
gtgactggactgtcccagtactag
DBGET
integrated database retrieval system
