Poecilia mexicana (shortfin molly): 106927484
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Entry
106927484 CDS
T08022
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei04510
Focal adhesion
pmei04512
ECM-receptor interaction
pmei04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106927484 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106927484 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106927484 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmei04147
]
106927484 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
pmei00536
]
106927484 (col4a2)
Exosome [BR:
pmei04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106927484 (col4a2)
Glycosaminoglycan binding proteins [BR:
pmei00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106927484 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106927484
NCBI-ProteinID:
XP_014858581
LinkDB
All DBs
Position
Unknown
AA seq
1672 aa
AA seq
DB search
MSATMQSQQDREHTNLRVLRLCLFLAALASTVQAGGKKHSGPCGGRDCSGGCQCFPEKGA
RGLPGPLGPQGSQGPPGRPGDPGIQGHKGQKGDQGTGGFIGPKGSTGMTGVPGFSGNDGI
PGHPGQAGSRGKPGADGCNGTKGEPGFPGLPGFLGGPGNPGLKGRKGAKGDSLDVTIYIE
RFRGDPGRPGEDGFPGPPGPRGKEGSRGPIGPKGPPGPPGPRGPKGTMTKVLKGVKGEMG
DIGPQGPPGNYTTQQRQPITGPSGLPGDKGERGDLADNLDGKGETGIMGMPGPRGESGAD
GPPGRKGEPGYPGLNGRDGPKGGRGDPGELISSGFPWSVGGLPGPRGETGPDGERGPIGD
QGLPGPPGLPASDTQQQSWDFFGLSGEKGAQGDKGLPGDQGRPAVFPGPKGSDGSPGSRG
PPGPRGSWKEFFKGEQGPRGRPGNAGAKGFKGELGECQCSSENFHRGLPGPAGKRGDPGM
TGEFGYEGDMGDQGPRGADGFPGSAGLNGFPGPKGRKGETTVAREKGSPGEPGDPGIDGV
VGLHGLPGPNGLHGLPGNRGPPGEGPRGERGDKGFPGWPGRPGSRGEAGTPGESVVGIKG
QHGPPGDDGLTGYDGVQGTPGSPGGCIPDGAGGQVDVTGSDCEPIPGPPGQPGPPGISGI
SGSPGVPGPKGFSGVEGVSGEKGEQGERGRGGTPGPRGFPGPRGDLGTPGTKGSLGNPGV
PGMPGRYGSQGEKGVHGEVMGASPGPPGDPGLPGLRGQKGQLGDQGQPGISGIDGMPGMI
GFRGLKGAPGLPGEEGRPGPAGTYGFPGDPGRSGPPGPAGTTGEPGRTGERGTGGDPGPP
GPIGLKGMPGAYGDDGGIGERGPPGDPGEPGATGRPGLQGLKGTKGSHGTYGFEGVTGNP
GLKGYEGLKGGPGTPGEVGLKGLAGSKGERGEQGLQGKPGVMSPKMLIHIKGAKGEHGHQ
GSPGFTGPRGTKGDQGVPGYDGAHGLPGDPSDEKGVHGDPGAQGLPGIKGMPGTPGSRGI
QGFDGMHGDKGGKGSPGGYGQTGVQGKKGGKGDKGIRVDLPGSPGLRGEDGFAGEPGLKG
LLGPIGDPGITGFDGIKGVKGEAGDLGIEGFPGLDGQRGTPGNQGQKGFPGIPGKDGIPG
VPGFSGNKGYPGLPGLYGLHGLKGQKGVSGTPGLDIVGPAGETGVKGRKGESGIPNSQPG
SPGPSGLKGFQGNLGDYGQPGLPGLRGLQGPSGTPDIAGKRGDPGFPGPRGSQGYPGASG
PPGLDAFPGEKGVPGENGFPGPTGTRGSRGDSGPAGYRGPDGISGKKGPKGDQGHMGIPG
QTGLQGERGPVGPKGDTGLPGFPGAPGSQGRLPPSITIPGERGLPGPRGIQGPKGISGGP
GPRGPPGDPGFMGPVGVKGMPGIGGTPGVPGYRGEVGNVGHPGLQGMEGQRGRPGGPGLP
GMAGRSISVGYLLVKHSQSDQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGSCLP
RFSTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEKEIQPYISRCSVCEAPSVA
IAVHSQDITIPQCPVGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIECN
GAKGTCHYFANKHSFWLTSIDQSFHTQPSSETLKAGQLLSRISRCQVCMKNL
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgaccatgcaaagtcagcaggatagagagcatacaaatctgagggtgctgcgt
ctctgcctcttcctcgccgccctcgcctcgacagtgcaggctggtgggaagaagcacagt
ggcccgtgtgggggaagagactgcagcggtggttgtcaatgctttccagagaagggtgcc
aggggtcttccagggcctcttggtcctcagggctcacaggggcccccagggcgaccaggg
gatcctggtattcaaggacacaagggacagaaaggtgaccaaggaactggtggcttcata
ggcccaaaaggcagcacgggaatgactggtgtacctgggttctctggaaacgacggcatc
cctggccacccaggacaagctgggtccagagggaagccaggagcagacggctgtaacggg
accaaaggagaacctggattcccaggattacctggttttctcgggggccctggaaatccc
ggtctaaaaggcagaaagggagcgaaaggggactctctggatgtcaccatttacatagag
cgctttaggggagatccagggagaccaggagaggacggatttccgggccctccaggacca
cgaggaaaggaaggtagcagaggccctataggacccaagggtcctccaggtcctccaggg
ccacgtggaccaaagggcaccatgaccaaagtgttgaagggagtcaaaggagaaatgggg
gacatcggaccgcagggcccaccaggaaactacaccactcagcaacgtcagcctatcact
ggaccttctggattaccaggtgacaaaggagaaagaggagatctggcagacaacttagac
ggcaaaggagaaactggtataatgggaatgcctggccctcggggcgaaagtggtgcggat
ggacctccgggtcgaaagggcgagcccggttatccagggctgaacggcagagacggacct
aagggaggcagaggtgatccaggggagctgatttcatcaggatttccctggtctgtgggt
ggtcttcctgggccccgtggtgagacgggtccagatggagagaggggtccgatcggagac
caaggcttgcccggaccacctggacttcctgcctccgacacacagcaacaatcttgggat
ttcttcggcctttctggtgaaaagggggcacaaggagacaagggtctaccaggagaccaa
ggaagacctgccgtctttccgggacccaaaggatctgatggaagtccggggagcagaggt
ccaccgggacccagaggatcgtggaaagagttctttaaaggagagcaagggccaagggga
agacctggcaatgcaggggctaaaggatttaaaggggaacttggagaatgtcagtgcagt
agtgaaaatttccaccgcggcttacctggtcctgccggtaagcgcggagatcctgggatg
accggagagttcggatacgaaggggacatgggagaccagggtccccgaggtgccgacggg
tttcctggatctgctggcctcaatggttttccagggcccaaaggacgaaaaggagaaaca
actgttgcgagagaaaaaggatcccctggagagcctggagacccgggaattgatggagtg
gtaggattacacggtttgccaggcccaaatggtctccatggtctccctggtaaccgcggt
cctccaggcgaaggacccaggggagagcgtggagacaaagggttccccggatggcccggt
agacccggttctcgtggggaggcgggaacgccaggtgaaagcgttgtgggtatcaaagga
cagcatggcccacccggtgatgacggcctcacaggctatgatggagttcagggaacgcct
ggaagtccgggcggctgtataccagatggagctggaggacaggtggatgtgacaggtagt
gattgtgaacctatcccaggtcctcctggtcagcctggacctcctggaatcagtggaata
tcaggttctccaggagttcctggcccaaaaggtttctccggtgtggaaggagtcagtgga
gagaaaggagaacaaggagagcgtggcagaggcggcactcctggaccacgaggttttcct
ggtccccgtggagacttggggactcctggcactaaaggctctttagggaatcccggtgtt
ccgggcatgcctggccgatacggatctcaaggggaaaaaggtgttcacggagaagtaatg
ggagcatcgcctggccctccaggcgacccaggactacctggcctgcgagggcaaaagggc
caacttggagatcaagggcagccagggatttcaggaatcgacgggatgcctgggatgatc
ggcttcaggggactgaaaggcgccccaggcctgccaggggaagagggaagacccgggcca
gctgggacgtacggtttccccggggatcctggcaggtcgggcccacctggtccggcaggg
acaactggagagccaggaagaactggagagagaggaacaggaggtgacccaggtcctcca
ggtccaataggattaaaaggaatgccaggtgcttatggagatgatggtgggatcggagag
cgcggcccgccaggtgaccctggagaaccaggtgcaaccggacgaccaggccttcaagga
ctcaaaggaacaaaaggtagtcatggaacgtatggttttgagggagtcacaggaaatcct
ggtctgaagggttatgagggactaaaaggggggcctggaacgcctggagaagttggcctg
aaaggactggcagggtcaaagggagagagaggcgaacaaggtctgcaaggtaaaccgggg
gtaatgtcgccgaaaatgcttatccacataaagggggccaaaggagagcacggacaccag
ggcagtccaggttttaccggaccaagaggtaccaaaggtgaccaaggtgtgccgggctac
gatggagctcacggtcttccaggggaccccagcgatgaaaaaggagttcatggggatcca
ggtgcacagggcctgccaggcattaagggaatgccagggacacctggaagcagaggcatt
caaggctttgacggaatgcatggtgacaagggcggcaaaggaagccctggtggctacggt
cagacaggagtgcaaggaaagaaaggaggaaaaggtgacaagggcattcgagtggacctt
ccaggatctccaggattgagaggagaggatggatttgcaggagaaccaggtctgaaaggt
ctacttggaccaatcggggaccctggcataaccggatttgacggtattaaaggggtaaag
ggagaagccggggatctgggaatagaaggattcccagggttggatgggcagagaggaact
ccggggaaccaaggtcaaaagggttttcctggaattcccgggaaagatgggataccaggt
gttcctggcttctccggaaataaaggttaccccggcctaccgggtctttatggattacat
ggactgaaaggacagaagggtgtctcaggaacaccaggtctggacattgttggacctgct
ggagaaactggagttaaaggaaggaaaggagaaagcggtattcccaacagccagccaggt
tctccaggtccatcaggactgaaaggcttccagggaaatctgggcgactatggccaacct
ggactgccaggattacgtggccttcagggaccaagtgggaccccagacatagcgggaaag
aggggggatcctggcttcccaggacctcgaggatcccaaggttatcccggagcaagcgga
ccgcctggactggatgctttcccaggagagaaaggcgtaccaggcgaaaatgggttcccc
ggccccactggtacgagaggatctcgaggagattcaggtccagcaggctacaggggccct
gatggaatctctgggaagaaaggaccaaagggagaccaaggtcacatgggaattcctgga
cagactggcttacagggagaaagaggaccagtgggcccgaaaggagacactggattgcca
ggttttcctggagcgcctggcagccagggccgtcttccaccttccattacaatcccagga
gaaagaggccttccaggaccgcggggtatccaaggcccgaaagggatttcaggggggcca
ggacctcgaggcccacctggagacccagggttcatgggacctgttggagttaaaggcatg
cctgggattggtggtactccaggagtgccaggttaccgcggcgaggtgggcaatgtgggg
caccctggtcttcaaggcatggaaggacaaagaggcaggcccggcggcccaggattacct
ggcatggcgggccgcagtatcagcgtgggctacctgctggtgaaacacagtcagtcagac
cagacgccaatgtgtccggtgggaatgtctaaactgtgggacggttacagtctgctgtac
ctggagggccaagagaaggcccacaaccaggaccttggtttggctggttcctgtctccca
cggttcagcaccatgccctttctgtactgcaaccctggggacatttgctactacgccagc
agaaacgataagtcctactggctgtcaaccactgctcccctccccatgatgcctgtggaa
gaaaaagaaatccagccgtacatcagccgttgctcggtttgcgaggctccgtcagtcgct
attgcagttcacagtcaggacatcaccatcccacagtgtcccgtgggctggaggagcctg
tggattggctactccttccttatgcatacggcagcaggaaacgaaggcggcggtcagtcc
ctgtcatcgcccggctcctgcctggaggacttccgcacaacgcctttcattgagtgtaac
ggagccaagggcacatgccactactttgctaacaagcacagcttctggctgacatccata
gaccagtcgttccatactcagccgtcatcggagacactaaaggcgggccagctcctctca
cgcatcagccgctgtcaggtctgcatgaagaacctgtga
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integrated database retrieval system
