Poecilia mexicana (shortfin molly): 106927501
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Entry
106927501 CDS
T08022
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03015
mRNA surveillance pathway
pmei04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106927501 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
106927501 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmei03021
]
106927501 (sympk)
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106927501 (sympk)
Transcription machinery [BR:
pmei03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106927501 (sympk)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106927501 (sympk)
U7-dependent histone pre-mRNA processing factors
106927501 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_MROH2B_C
Cnd1
PDS5
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
106927501
NCBI-ProteinID:
XP_014858614
Ensembl:
ENSPMEG00000008099
UniProt:
A0A3B3WUT9
LinkDB
All DBs
Position
Unknown
AA seq
1216 aa
AA seq
DB search
MERPSKDGELPAVIDITTSEKVVELLNQAALIPTDEKLTVLKQVQELIINKDPSLLDNFL
DEIIAFQTDRSMEVRKFVIGFIEEACKRDNELLLRLIANLNLLLKDDSVNVVKKAILSLT
QLYKVALQWLVRSRSVSEMQEACWDLVSQMTGDVLSMLDSENDGVRTHAIKFTESLIVTL
SPRTPESDVPKRQEGDISLDKVPRDHPYIRYDALCDEGKAALDKLLKFMVHPAISSINLT
TALGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVSVLKHPCS
LEFQVQIGTLLLDLGMPQSEISRNTPPPREQRKRPRYEPATEGKKVKMEPALIEDDEDKE
EPVPLAAPKPVPAPTPQSAIDLTAEFLRPLLTPENVANLVLISMVYLPDVMPASFQATYT
PVESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKAREDESGKEEPVEDESGGKDVLIRR
SLSSMVGQAISVVGGYSEKPPAPEAPAVKRLPEPILPSVQTKMTGAGGRKKVFRLADVVQ
PLSDSQIGALSSRAVKRILHSEKAVSQSGMSHVRVKLLSRLVTQFEGVMKDDVLDYVLED
MRCRSDLAFSLLYQEYNSYLSQLPAGLLDGYDHCLYTLLSGLQEKPEQRDGLFTKLVLEA
PIITESALDVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHDKEKVRST
ALAFLKRMYEKDHLRDYIEKFALNYLQLLVHPNPPSLLFGADKDTEVAAPWTEETVRQCL
FLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENCPKG
AETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQALPKLI
KLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKATNLCFG
EKNVYTSEVLAVVMQQLMEQNPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQVWKY
PKVWEGFVKCCQRTKPQSYSVLLQLPPPQLASVFERCPEMRAPLLQHVLSFTPHQQAHIP
TSIMTVLEAHKKPDPVPAEPVLKEELAEPTVAQQPGPGPEPGPGPVLQQENVLLRDEEEP
MEQEEAEPPTPETTDPIHQEEEPKAAEEPEPEPGQEPLEEPMEEAEAELSDQPEPLTAPE
PEAAPPAAGSGSENAE
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggagcgtccttcaaaggacggggagcttcctgctgtcatcgacatcactactagcgag
aaggtggtggagctgctgaaccaggcggctctgatccccacagatgaaaagctcactgtt
ctcaaacaggttcaggaactcatcatcaacaaggatccatctcttctggacaacttcctg
gatgagatcatcgccttccagacggaccggtccatggaagtcaggaagtttgtgatcggg
ttcattgaggaagcctgcaaacgggacaacgagcttctgctgcggctcatcgccaacctg
aacctgctgctgaaggacgacagcgtcaacgtggtgaagaaggccatcctgtccctgacg
cagctctacaaggtcgccctgcagtggctggtccggtcccggtcggtgtcggagatgcag
gaggcctgctgggacttggtgtcccagatgaccggagacgttctgagcatgctcgactca
gagaacgacggcgtccgcacacacgccatcaagttcaccgagtcgctgatcgtcacgctg
tcgccgcggacgcccgagtccgacgtccccaagagacaggaaggagacatcagcctggac
aaggttcccagggaccacccctacatccgctacgacgctctgtgcgacgaggggaaggcg
gcgctggacaagctgctgaagttcatggttcacccggccatttccagcatcaacctgacg
accgcactcggctccctagcaaccattgctaggcaacggcccatgttcatgtccgaggtg
gtgcaggcctacgagacgctgcacgccaacctgccccccaccctggcaaagtcccaggtg
agcagcgtgaggaagaacctgaagctgcacctggtgtcggttctgaagcatccgtgcagc
ctggagttccaggtccagatcggcacgctgctgctagacctggggatgccgcagagtgag
atcagccgcaacacgccgccgccacgcgagcagaggaagcgcccgcgctatgagcccgcc
accgagggcaagaaggtcaagatggagccagcgctcattgaagatgacgaggacaaagag
gagccggtgccactcgccgccccgaagccagtgcccgccccgactccgcagtcggccatc
gacctgacggccgagttcctgcgacccctgttgaccccggagaacgttgccaacctggtg
ctcatcagcatggtgtacctgccggacgtcatgccggcgtccttccaggccacctacaca
ccggtggagtcggccggaaccgacgcccagatcaaacacctggcccggctgatggcgacc
cagatgacagcggccgggatcggaccaggtctggagcagtgcaaggcgagggaggacgag
tcggggaaggaggagccagtggaggacgagtcgggggggaaggacgtcctgatcagacgg
tcgctgtcctccatggtgggccaggccatctctgtggtgggcggctacagcgagaagcct
cccgcccccgaggcgcccgccgtcaagaggcttcctgagcccatcctgccctccgtccag
accaagatgacgggcgccggcggcaggaagaaggtgttccgcctggcggacgtggtccag
ccgctgtccgactcgcagatcggcgcgctgtcctccagagccgtgaagcgcatcctgcac
tctgagaaggcggtctcccagagcggcatgtcccacgtcagggtgaagctgctgtcccgg
ctggtgacccagttcgagggcgtgatgaaggacgacgtcctggactacgtcctggaggac
atgcgttgccgtagcgacctggccttctctctgctgtaccaggagtacaacagctacctg
agccagctgccggccggcctgctggacggatatgaccactgcctctacaccctgctgtcc
gggctgcaggagaaacccgagcagagggacgggctcttcaccaagctggttctggaggct
cccatcatcaccgagtcggcgctggatgtgatccgccgctactgtgaggacgagtcccgg
gtttatctgggcatgacgacgctgaaggagctgatcgtcaagaggccgtccaggcagttc
cagtacctccatgttctgctggacctcagctcccacgacaaagagaaggtgcgcagcaca
gccctggccttcctgaagcggatgtatgagaaggaccacctgagggactacatcgagaag
tttgccctgaactacctgcagctcctggttcacccgaacccgccctcgctgctgttcggc
gccgataaggacacggaggtcgctgctccgtggacggaggagacagtgagacagtgtctc
ttcctctacctgtcgctccttcctctgaaccaccggctggtccatgagttggcgtccgtc
tacaccgaggcgatcgccgacatcaagcgcagcgtgctgcgcgccatcgagcagccgatc
cgcgggatggggatgaactctccagagctgctgctgctggtggaaaactgtcctaaaggg
gcagagactctggtcactcgctgtctgcacattttgaccgataaagtgcctccgtcgccg
gagctggtggagcgggtccgggacctctaccacaaacgtgttccggacgtccgctttctg
atcccggtcatcaacggcctggagaagaatgaagtcatccaggctctgccgaagctcatc
aagctcaacccgatcgtcgtgaaggaagtcttcaaccggctgctgggaactcagcacagt
gagggaagctcttcggtttctccgctgactccaggagatctgctcatcgccttgcacaac
atcgactcaacaaagtgtgacatgaaatccatcatcaaagccaccaacctgtgcttcggg
gagaagaatgtctacacgtcggaggtgctggcggtggtgatgcagcagctgatggagcag
aacccgctgcccatgctgctgatgcgcaccgtcatccagtccctcaccatgtacccgcgc
ctgggcggcttcgtcatgaacatcctgtcccgcctcatcgtcaagcaggtgtggaagtac
cccaaggtgtgggagggcttcgtgaagtgctgccagcggaccaagccgcagtcctacagc
gttctgctgcagctgccgccgccgcagctggccagcgtgtttgagcgctgcccggagatg
agggcgccgctgctgcagcacgtcctgtccttcacgccgcatcagcaagctcacatcccg
acctccatcatgacggtgctggaggcccacaagaagcctgatccagtaccagcggagccg
gttctgaaggaggaactggcagaaccgactgtcgcacagcaaccaggacccggacctgaa
ccaggaccaggaccggtgctacagcaggaaaacgttctgctgcgggacgaagaggaaccg
atggaacaggaagaggcggagccaccgacacctgagacgaccgacccgattcaccaggag
gaagagcctaaggccgcagaggaaccagaaccagaaccgggccaggagccattggaggaa
ccgatggaggaggctgaggccgagctgtcggatcagccggaaccgctcacggctccagaa
ccggaggcggcgccacctgcagctggaagcgggtcggagaacgcagagtag
DBGET
integrated database retrieval system
