Poecilia mexicana (shortfin molly): 106927884
Help
Entry
106927884 CDS
T08022
Name
(RefSeq) collagen alpha-2(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei04510
Focal adhesion
pmei04512
ECM-receptor interaction
pmei04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106927884
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106927884
09142 Cell motility
04820 Cytoskeleton in muscle cells
106927884
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmei04147
]
106927884
00536 Glycosaminoglycan binding proteins [BR:
pmei00536
]
106927884
Exosome [BR:
pmei04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106927884
Glycosaminoglycan binding proteins [BR:
pmei00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106927884
Hyaluronan
Extracellular matrix or blood plasma proteins
106927884
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
106927884
NCBI-ProteinID:
XP_014859243
Ensembl:
ENSPMEG00000018192
UniProt:
A0A3B3YVB6
LinkDB
All DBs
Position
Unknown
AA seq
1047 aa
AA seq
DB search
MTGINSVAQMILWVVILMVFRAASPQPAPPRGPRPVPGRGDSPEPTPAPLPPEPTPRPEG
CETTIIDCPIKLFFTIDTSETIALQESPPGSLVESIKEFMKIFAQKLEDEEYRGQIQITW
SFGGLHFSQKQVLFSQFTTRQSFIRNLSQIKYLGKGTYIDCALTNMTRQMTYSGKQAVLF
SVVITDGHVTGSPCGGIKVAGDRARDQGIHIFSVAASASIDELGMMEIASSPTEVYRDDY
IVMEIVNGRPRMNTETIDRIIKVMKYQAYLQCYKPTCLAVPGNPGRKGASGPKGIKGDRG
IKGPKGYKGNQGDPGIEGSIGLPGLKGKTGFKGEKGEIGLIGAKGAVGTPGKNGADGQKG
KIGRIGAPGCKGDPGEKGPDGRPGDPGDSGLSGKEGEKGDIGLPGKNGPPGPVGNPGLTG
EKGHPGNPGPPGERGFPGISGKPGLKGELGRRGDPGRKGAPGQDGAPGPKGDRGASGDRG
RPGEAGVKGAKGDQGLPGPRGWPGEPGSVGGNGIVGPPGDPGLRGNPGPPGPQGDNGRPG
FSYPGPRGPAGERGDPGKRGPRGGRGECGAKGEPGAKGAPGEPGESGQPGEPGERGPPGD
PGKDGGPGPAGDPGLTDCDVMTYIRETCGCCDCEKHCGALDIVFVIDSSESVGMTNFTLE
KNFVINTINRMGSMASDPTSPTGTRVGVVQFSHEGTFEAIRLDDPSIDSMSSFKTAVKNL
QWIAGGTFTPSALKFAYDNLIRDSKRARANVSVVVVTDGRFDPRDDDSKLRYLCNDPNVV
VNAIGVGDMFDKEHDSETLVSIACDNKNRITEMKRYSDLVADNFIQKMETVLCPDPVIKC
PDLPCKTELDVAPCVGRPVELVFLLDGSERLGMENFGHARHFVQMVANALTMARNRNDQN
GARLALTEFGNENENQVAFLLTHDQKAITSGLSGLHYLDASSAVGPAIFKAIDEILGKGP
TRKTRRGAEVSFVFITDGVTNITNLDKAASAMASEHIFSTVIATGSDVDEEVLTKLVMGD
QTAIFKSQTFSDLLQPSFFERFIRWVC
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgactggaatcaattcagtcgcgcagatgattttgtgggtcgtcattctgatggtgttc
cgagccgcatcgcctcaacctgctccccctcgaggacccaggcccgtacctggacgaggt
gacagtccggaaccaacgccggctccgctgccgccagagcccacaccaagaccagaaggt
tgtgagacaacgatcatcgactgtcccatcaagctgtttttcaccattgacacgtcagag
accatcgccctgcaggaatctccgccaggcagtctggtggagagcatcaaggagttcatg
aagatattcgcccagaaactcgaagacgaggagtacagaggccagatccagatcacttgg
tcctttgggggattgcacttctctcagaagcaggtgttgttcagtcagttcacgaccaga
cagagcttcatcaggaatctcagtcagataaaatacctgggcaaaggcacctacatcgac
tgcgctctcacaaatatgacccgccagatgacgtactcaggcaaacaggctgtcctgttc
tcagtggtcatcacagacggtcacgtgacggggagtccatgcgggggcatcaaggtggca
ggcgacagggctcgggatcaagggatccacattttttcagtagcagcctccgcaagcatc
gatgaactagggatgatggagatagccagctcacccacagaggtgtaccgagacgattac
atagtcatggagatcgttaatggaagaccgaggatgaacactgaaactattgatcgcatc
atcaaagtcatgaaatatcaagcatatctacagtgttataaacctacatgccttgcagtc
cctgggaacccgggacgaaaaggggcctcgggtccaaaaggcattaaaggtgacagaggc
atcaaaggaccaaaaggttataaaggtaaccagggtgatcctgggattgaaggttcaatt
ggactacctggtctaaagggaaaaaccggttttaaaggtgaaaagggtgaaattggatta
attggagcaaagggtgcggtgggtacaccgggaaagaacggagcagatggacaaaagggt
aaaattggtcgaattggagctcctggctgcaaaggtgatccaggggaaaagggaccagat
ggacgcccaggagaccctggtgactctggattatctggaaaagagggagaaaagggtgat
ataggtctgcctgggaagaatggccccccaggtcctgtgggaaatccaggactaaccggt
gaaaagggacatcctggcaatccaggaccacctggagaaagagggtttcccgggatcagt
ggcaaaccaggacttaagggcgaactgggcaggagaggagatcctggaaggaagggggca
ccaggacaagatggggccccaggaccaaagggagatcgaggagcgtcgggggacagaggt
cgacctggggaggctggagttaagggtgcgaagggagaccaaggactaccaggaccaagg
ggttggccaggagaaccaggcagcgttggaggaaatggcatagtggggcctcctggagac
cccggactgagaggaaaccctggaccacctggaccgcagggagacaatggaagaccagga
ttcagctaccctggaccaagaggaccagcaggagagagaggagatccgggcaagagagga
cccagagggggcagaggtgaatgcggtgcaaaaggggagccgggagccaaaggagcacca
ggagagcctggtgaatcaggccagccaggagagccaggagagagaggacccccaggagac
cctggaaaagatgggggaccagggccagctggggatcctgggctcactgactgtgatgtt
atgacgtacatcagggagacttgtggttgttgtgactgtgagaaacactgcggcgctctg
gacattgtctttgtaattgacagctctgagagcgtcgggatgaccaacttcaccctggaa
aagaactttgttatcaacaccatcaacaggatgggatcgatggcctctgaccccacatct
ccaaccggtacgagagttggagtggtacagttcagtcacgaaggaacgtttgaggccata
cgactcgatgacccttccatagactccatgtcttcattcaagacagcagtgaagaatctg
cagtggattgctgggggcacatttaccccatctgcactcaagtttgcctatgacaaccta
ataagggacagcaagagagcccgcgccaatgtatctgtagtggtagtgacagacggccgc
ttcgaccctcgtgatgatgacagtaaactcaggtacctctgcaatgaccccaacgtggtg
gtgaatgccattggggttggtgacatgtttgacaaggaacatgacagtgagaccctcgtg
tcaatagcctgcgacaacaagaaccggatcactgagatgaagcgatactcagacttggtg
gctgacaacttcattcagaagatggaaacggttctctgccctgatccagtgattaagtgt
ccagatcttccctgtaaaactgaacttgatgtagctccatgtgttggacgacccgtagag
ctggtgtttcttctcgacggttcggagcgcctcgggatggaaaactttggccatgcgcgt
cattttgttcaaatggtcgcaaatgcattgacaatggccaggaaccgaaatgaccaaaac
ggggctcgtctggcactgacagagtttggcaatgagaatgaaaaccaagtggcctttctt
cttacacacgaccagaaggctatcacttctggtctatcaggtttgcattatcttgatgct
tcgtcagcagtgggacctgccatcttcaaagccatcgatgagattttgggtaaaggaccc
actcgcaagacaagacgtggtgccgaggtttcatttgttttcatcacagatggtgttact
aatatcaccaacctggacaaggcagcttctgcaatggcctcagaacacatcttttccact
gtgattgccacaggaagtgatgtggatgaagaagtcctaacaaagttggttatgggtgac
cagactgccatctttaagagtcagacattttctgatctgttacagcctagtttctttgaa
cgtttcatcaggtgggtgtgttag
DBGET
integrated database retrieval system
