Poecilia mexicana (shortfin molly): 106928437
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Entry
106928437 CDS
T08022
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106928437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmei03021
]
106928437
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106928437
Transcription machinery [BR:
pmei03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106928437
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
106928437
U7-dependent histone pre-mRNA processing factors
106928437
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
106928437
NCBI-ProteinID:
XP_014860194
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MASKRKADMVIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEDSMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSSQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCAQGQRVSGILVKKNFNYHILNPSDLSTYTELAMSTVKQNQAIPFTGPYSLLVCHLRNL
TGDVEELDGTEKKTLKIFKSITLVHEVGMVVLEWVANPLNDMFADAVTTVVLEVQSNPKA
QKVMETQTTTMDMDVFQTRLEVMLQDMFGEDCVDFSDGKVISVTVDGQTVHISLETRSVY
CEDDISEDDSLREMVELAVQRLYDALNPAL
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaagcgaaaagcagacatggtgatccctgctgaggaaagcgaccagctcctc
atccgtcctcttggcgctgggcaggaggttgggagatcttgtataatcctggagttcaaa
gggaggaaaattatgctggactgcggcatccatccgggtttggagggaatggatgctctt
ccctatatcgacctgatcgaccccgcggagatcgacctcctcctcatcagccattttcac
ttggatcactgcggcgctctgccctggttcctccagaaaaccagctttaaggggcggaca
ttcatgacgcacgccaccaaggccatctaccgctggctgctgtcagactacgtcaaagtc
agtaatatctctgcagatgacatgctgtacactgagaccgacctggaggacagcatggat
aaaatcgagaccatcaacttccatgaggtgaaggaagtggctgggatcaagttctggtgc
taccatgctggtcatgtgctgggagcggccatgttcatgatcgaaatagctggagttaaa
ctgctgtacacaggcgacttctccagacaggaagacagacacctgatggcagcggagatc
ccgagcgtcaaacctgacatcttaatcatagagtcgacctacgggactcacatccatgag
aagagggaggagcgcgaggctcgcttctgcaacacggtgcacgacatcgtcaaccgggag
ggccgctgcttgattcctgtgttcgccctgggacgggcccaggagctgctgctcatcctg
gatgaatactggcagaatcacccagaactccacgacattcccatctattacgcctcgtct
ctggccaagaagtgcatggctgtctaccagacctacgtcaatgcaatgaacgacaaaatc
cgcaaagcaatcaacatcaacaacccctttgtgttcaaacacatcagcaatttgaagagc
atggaccactttgacgacatcggccccagcgtggtgatggcgtcgccgggtatgatgcag
agcggcctctccagggagctgttcgagagctggtgcaccgataagaggaacggcgtcatc
atcgctgggtactgtgtggagggaacgctagctaagcacatcatgtctgagccggaggag
atcaccaccatgtccagtcagaagctgccgctcaagatgtcggtggactacatctccttc
tccgcccacaccgactaccagcagaccagcgagttcatccgggccctcaagccgcctcat
gtgatcctggttcacggggagcagaacgagatggcccgcctgaaggcagcgctgatccgg
gagtacgaggataacgaccaggtccacatcgaggtgcacaaccctcgcaacacggaggcc
gtcactctcaacttcaggggagagaagctggccaaggtgatgggttccctggctgataag
aaatgtgctcagggtcagagggtgtctggcatactcgtcaagaagaacttcaattaccac
atcctgaacccgtccgacctctcgacgtacacagagctggccatgagcacggtgaagcag
aaccaggccatcccgttcaccgggccgtactcgctgctcgtctgccacctgaggaacctg
acaggggacgtggaggagctggacggcaccgagaagaaaacactgaagatctttaaaagc
atcactctggtccacgaggtcggcatggtggtgctggagtgggtagccaatccgctgaac
gacatgtttgctgatgccgtcaccactgtggtgctggaggtgcagtccaacccaaaggct
cagaaagtcatggagacgcagaccaccaccatggacatggatgtcttccagacccggtta
gaggtcatgctgcaggacatgtttggagaggactgtgtggacttcagcgatgggaaagtc
atttctgtgacggtggacggacagacggtccacatcagcttggagacgcggtcggtttac
tgcgaggacgacatctcggaggacgactccctcagagagatggtggagctggccgtgcag
cggctctacgacgccctgaacccggccctctga
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integrated database retrieval system
