Poecilia mexicana (shortfin molly): 106928590
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Entry
106928590 CDS
T08022
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei04510
Focal adhesion
pmei04512
ECM-receptor interaction
pmei04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106928590
04518 Integrin signaling
106928590
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106928590
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmei00536
]
106928590
Glycosaminoglycan binding proteins [BR:
pmei00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106928590
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
106928590
NCBI-ProteinID:
XP_014860436
Ensembl:
ENSPMEG00000007485
LinkDB
All DBs
Position
Unknown
AA seq
1492 aa
AA seq
DB search
MLSFMDSRTVLLLIASQVCLLAVVRGQLEDDQEDASACRHEGQLYNDKDIWKPEPCRICV
CDTGTVLCDDIVCEELRDCPKPEIPFGECCPICPADQPPPFGGGPGAKGQKGEPGDITDV
VGPRGPSGPMGPPGEQGPRGPRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGL
GGNFAAQMTSGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGSPGEAGEPGQ
SGPMGPRGPSGPPGKPGDDGEPGKPGKPGDRGPTGPQGARGFPGTPGLPGIKGHRGYPGL
DGAKGETGAVGAKGEAGAPGESGAPGPMGPRGLPGERGRPGSTGAAGARGNDGLPGPAGP
PGPVGPAGAPGFPGSPGTKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGI
PGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGP
AGPQGAPGPQGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGHKGAPGERGP
PGASGAKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGA
RGQPGVMGFPGPKGATGESGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGE
QGQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGTQGL
QGPRGLPGTPGTDGPKGAIGPAGGPGAQGPPGLQGMPGERGAAGIPGPKGDRGDVGEKGP
EGAPGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGPAGVRGAPGDRGETGPPGPAGF
AGPPGADGQPGTKGEQGEAGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGA
TGFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGE
KGDPGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSAGGPGD
RGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPGIKGDRGNTGPAGAPGAPGAPGA
PGPVGPTGKQGDRGESGAQGPAGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGF
TGLQGLPGPPGQPGDQGATGPAGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRTGD
SGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQAAGNLRQHDAEV
DATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFC
NMETGESCVNPNPAKIPRKNWWSSKSKERKHVWFGEEMNGGFHFSYGDDSLAPNTASIQM
TFLRLLSTEASQNLTYHCKNSVAYLDASPGNLKKAVLLQGSNDVEIRAEGNSRFTYSVME
DGCARHTGQWGKTVFEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctttatggattccaggactgtactgcttcttatagcatcccaagtttgtcta
ttagccgttgtgagaggtcaactggaagatgaccaggaggatgcttctgcctgtaggcac
gaaggacagctttataacgacaaggacatatggaaaccagagccttgtcgcatctgtgtg
tgtgacacgggaacggttctgtgtgatgacattgtctgcgaggagctaagagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgccctgctgaccagccgccacct
tttggtggaggaccaggagccaagggtcagaagggtgaacccggagacattaccgatgtt
gtaggaccaagaggaccatccggccccatgggcccaccaggagagcaaggaccccgagga
ccaagaggagaaaaaggagagaaggggagccccggtcctcgtggcagagatggtgaacct
ggcacccctggaaaccctggaccccccgggcctccaggacctaatggaccccctggactt
ggtggaaactttgctgctcaaatgaccagcggtttcgatgagaaggccggaggcgcacag
atgggtgtgatgcaaggaccaatggggcccatgggaccgagaggaccacctgggccctca
ggatcacctggcccacaaggtttccaaggtagcccaggagaggctggagagcctggacaa
tctggccccatgggtccccgtggcccctccggacctcctggaaaacccggagatgatggt
gaaccaggtaaaccagggaaaccaggtgaccgtggacccaccggacctcagggagctcgt
ggtttcccaggaactcctggtctgccaggcatcaagggacacagaggttatccaggtctt
gacggtgcaaagggagaaactggtgctgttggtgcgaagggtgaggccggtgctcccggt
gagagcggcgctcctggacccatgggacctcgtggtttgcctggggagagaggacgtccc
ggatccactggagctgctggtgcacgtggaaacgatggcttgcctggtcctgctggtcct
ccaggccctgttggtccagctggagctccaggcttccccggatctcctggtacaaagggt
gaagctggtcctactggcgctcgtggtcccgaaggagcccaggggccccgtggagagtca
ggcactcctggatcacctggaccctctggtgcttctggtaaccctggcactgatggtatc
cctggagctaaaggttcagcaggtgctccaggtatcgcaggtgctcctggttttcctgga
cctcgtgggcctcctggacctcagggagcaactggacctcttgggccaaaaggaacatct
ggagatccaggaatccccggattcaagggggaagcgggaccaaagggagaaattggacca
gctggacctcagggagcccctggccctcaaggagaagaaggcaagagaggacccagaggt
gagcctggttctgctggacctcttggacctccaggagaaagaggagctcctggcaaccgt
ggtttccctggtcaggatggtctggctggtcacaagggagccccaggtgagcgcggaccc
cctggggccagcggtgccaaaggagccactggtgaccctggccgtcctggagagcctggt
cttcctggtgcaaggggtctgactggtcgtcctggtgatgctggacctcagggcaaagtt
gggccttctggagctccaggtgaggacggacgtccaggaccccccggccctcagggagcc
agaggacagcctggtgtcatggggttccctggacccaaaggagcaactggtgaatctggc
aaatctggtgagaaaggactggctggagctcctggtctgagaggtctgcccggaaaagat
ggagaaacgggcgcggctggaccccctggccctgctggccccgctggggagagaggagag
caaggacagcctggtccctctggtttccagggtcttccaggacctcctggccctcccggt
gagggaggcaaaccgggagaccagggcgttccaggagaagctggagctgctggtgccact
ggacccagaggagagcgtggttttccgggagagagaggagctgctggaacgcaaggtttg
cagggacccagaggtctgcctgggactcctggaactgacggacccaagggagccattgga
cctgctggaggtccaggagctcagggtccaccaggcctgcagggtatgccaggagagaga
ggagctgctggcattcctggacccaaaggagacaggggtgatgttggagagaaaggacct
gaaggtgctcctggcaaagatggcgccagaggtcttactggtccaattggtcctcctggt
cctggtggtccaaatggcgagaagggtgaatctggacctgctggaccatctggacctgct
ggtgttcgtggtgcacctggagacagaggagagactggacctcctgggcctgctgggttt
gctggacctcctggagccgatggtcagcctggaaccaaaggagagcagggagaagctgga
cagaagggagatgctggagctcctggaccccaaggaccatctggtgcccctggccctgcg
ggtcctacaggtgtttctggacctaaaggtgctcgtggtgcccagggtcctcctggtgcc
actggtttccctggagctgctgggcgagttggacctcctggccccaacggtaatcctgga
cccgcaggtcctgctggccctcctggtaaagacggaccaaaaggagtgagaggagacggt
ggacctccaggcagacagggtgacgctggactacgcggtcccgcaggagctccaggagag
aagggcgaccctggagaggacggtcctcctggtccactaggtccctcgggtcctcaggga
ttggctggtcagcgcggtattgttggtctacccgggcagagaggtgaaagaggtttccct
ggtttgcctgggccttctggtgagcctggaaagcagggatctgctggtggtcctggagac
cgtggaccgcctggaccagtcggacctcctgggctcactggtcctgctggagaacctggt
agagagggcaaccctggatctgatggacctcctggtagagatggttctcctggaattaag
ggtgaccgtggcaacaccggtcctgctggtgctcctggtgctccaggtgctcctggggct
cccggcccagtcggtcccaccggaaaacagggagacagaggggagtctggtgcccaagga
ccagctggacctccaggacctgccggtgccagaggaatgcctggaccccaaggcccccgt
ggtgataagggtgaagctggagagtctggtgagagaggtcagaaggggcacagaggtttc
accggtctgcagggtctccctggaccaccaggtcaacctggagaccagggtgccactgga
cctgctgggccttctggacaaagaggaccacctggacctgttggtcctgctggaaaagac
gggtcaaatggcttaccaggacccatcggaccccctggacctcgtggtcgtactggagac
tctggtcccgctggtcctcctggaaaccctggaccccctggtcctcccggtcctcccggt
cctggtattgacatgtctgccttcgctggtctgggtcaaacagaaaagtctcccgatccc
ctgaggtacatgagggcagaccaggccgctgggaatctccgtcaacatgacgcagaggtc
gatgccaccctcaagtccctcaacaaccagattgagaacatccgcagcccagagggatcc
aagaaaaaccctgcccgcacctgtagagacctgaagctctgccatcccgactggaagagt
ggtgagtactggattgatccaaatcagggctgcactgtagatgcaatcaaagttttctgc
aacatggagaccggggagtcctgtgtgaaccccaatcctgccaagatcccacgcaagaac
tggtggtccagcaagagcaaagaacgcaaacatgtctggttcggagaggaaatgaacgga
ggattccatttcagttacggtgatgacagcctggcacccaacaccgcctccattcagatg
actttcctgaggttgctgtcaacagaggcttcccaaaatctcacttaccactgtaagaac
agtgtggcctacctggatgcttcaccaggcaacttgaagaaggccgtcctgctgcaaggc
tccaacgatgtggagatcagagccgagggcaacagccgcttcacctacagcgtcatggaa
gacggctgtgcgagacacacaggacagtggggtaagacagttttcgaatacaggtcgcag
aagacctcccgtctgcccatcgtggacattgcccccatggatatcggtggagcagaccag
gagtttggagttgatattgggccagtttgcttcttgtaa
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integrated database retrieval system
