Poecilia mexicana (shortfin molly): 106929249
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Entry
106929249 CDS
T08022
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei04382
Cornified envelope formation
pmei04510
Focal adhesion
pmei04512
ECM-receptor interaction
pmei04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106929249 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106929249 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106929249 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106929249 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmei04147
]
106929249 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
pmei00536
]
106929249 (col4a5)
Exosome [BR:
pmei04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106929249 (col4a5)
Glycosaminoglycan binding proteins [BR:
pmei00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106929249 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106929249
NCBI-ProteinID:
XP_014861520
LinkDB
All DBs
Position
Unknown
AA seq
1688 aa
AA seq
DB search
MTRGLRRLRQPAWVVIWLVLYATIQLSDSAACNGCGGSKCDCSGVKGEKGERGFPGLTGQ
PGVPGFPGPEGPIGTRGEKGSDGPSGPSGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPGP
RGVPGCNGTKGEPGFPGSSGIPGRQGLPGPPGLPGEKGDRGDVFYNNNYGQKGSVGLPGL
PGSPGSPGPIGLPGPTGPPGLPGYEGVPGPPGPPGPKGNMGLNFEGPKGDKGDQGLPGPP
GPPGPGQGEQVRPPPTEIQRGDKGDPGPPGLPGDPGNPGPPGPSGGQKGEKGEPGEAGKR
GKQGKDGDPGAPGYPGLKGEPGSPGLPGRDGERGQKGDRGFPGPPGPVIRPTNGAVVGQK
GEPGFPGNPGAKGERGPSGFPGPQGAPGIPGIGGSGPPGPPGFPGDKGQKGDPGTPSNAL
PGPPGRPGNPGNPGPQGARGPPGYSSPIDNCLPGDPGLPGIQGQKGFPGEQGQKGQKGET
CVNCIDGGNLIPGPPGPPGPPGFAGPPGPPGVKGEPGFQGITGLSGPPGVPGPVGAPGFP
GEKGEPGDTFGGGGVKGEKGDSGFPGPPGLPGLDGRPGRDGAPGPPGPKGAPGSLLLKGE
RGPPGDTGPPGIPGDRGPPGGPGYGVPGPPGEKGAQGNSGAPGNPGNPGVKGEPGPTVTE
KGQPGPKGIDGNPGSPGPPGPRGADGQPGSPGFPGPKGEPGQPGVGLPGPAGVKGFPGIP
GQPGTPGKAGRPGIDGFPGPPGFPGPKGEAGFGLPGPPGPPGIAGAKGFPGQKGDPGFPG
NPGGPGRPGFDGGPGLKGEPGSPGQPGPRGPPGSSTSGAQGPPGPPGPPGPMGPIGYPGG
SGEKGDPGPPGLDIPGLPGDRGNPGFPGPPGPIGIPGPPGGPGRDGAPGFPGPKGDMGQI
GPPGPSGGPGTPGGPGAPGLKGEPGFPGSNGIPGGPGSKGEKGDPGSPGLPGPIGPVDIR
GAKGDPGTPGSPGFPGPKGIAGLPGDPGLPGQDGRPGIPGPPGLKGEPGIPGSPGGPGSP
GPKGTMGDMGIPGPMGSKGSPGFQGRPGSPGQPGIPGLQGPKGDPGSGGVGPPGPQGQKG
DPGQPGFPGSPGAKGGPGTPGLPGLPGLPGVKGDVGLAGFQGPPGFPGPKGLDGVPGAPG
LTGAPGRPGESGRTGPPGQVGEKGQPGRDGIPGPAGVKGEPGIPGFGVPGPPGIAGSPGE
KGNPGLPGPSGGPGFPGPKGDTGFPGPPGSPGVSGPPGPPGLPFQGPKGNQGPPGPPGRS
GPAGPPGVPGPEGPRGLPGSGGVKGEKGNPGNPGLPGQPGQKGDPGFPGAPGPSGGPGGP
GPKGDRGFPGVTGFSGPKGEPGFPGPSGLPGDPGADGAPGPPGDPGSSSPIDYVKGEQGP
PGPPGSPGATGPPGPPGAPGSSGLPGPSGDPGSPGPPGFNGPPGRKGDTGPPGQSGQKGN
PGPPGSDGPQGPPGLPGSGSAAHGFLLTRHSQSEITPECPSGTNFIYDGYSLLYVQGNER
AHGQDLGTAGSCLRRFSPMPFMFCNINNVCNFAARNDYSYWLSTLEPMPMSMEAVTGDSI
KPYISRCAVCEAPAMVIAVHSQTIQIPSCPANWRSLWIGFSFMMHTSAGAEGSGQALASP
GSCLEDFRSTPFIECHGRGSCNYFSNSYSFWLATVEKLDMFKKPQSETLKAGNLLTRVSR
CVVCMKTT
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgactagaggcttgaggcgcctgcgacagcctgcctgggttgtgatttggctcgtactg
tacgccaccatacaactatccgactctgcggcttgcaatggatgtgggggctccaagtgt
gactgcagtggagtgaaaggagaaaagggggaaaggggtttcccaggtcttaccggacag
ccaggggtcccagggttccccggacctgagggaccaatcggaactagaggagagaaggga
agtgatggaccttcgggaccatctggtccaaaaggaataagaggaccatctggattgcct
ggatttccaggaacgccaggacttccaggtctgccaggacaggatggacccccgggccca
agaggagtgccgggttgtaacgggacaaagggtgaacctggttttccaggaagttcagga
atacctggacgacaaggacttccaggtccacctggtctcccaggagaaaagggagaccgt
ggagatgtgttttacaacaacaattatggacaaaaaggatcagtcggtttgcccggattg
ccaggatctccgggcagtcctggacccataggtttaccaggccctactggccctccagga
cttccaggctacgagggtgttccaggtcctccaggtccacctggacctaagggaaacatg
ggtttgaactttgaaggtcccaaaggagataagggtgatcaagggttgccgggacctccc
ggtcctccaggaccaggtcagggggaacaggtcagaccaccaccaacagagatccagaga
ggagacaagggtgaccctggccctccaggtctaccaggtgacccaggcaacccaggtcca
cctggtccctctggtggccagaagggagagaaaggagaaccaggagaagcaggaaaacga
ggaaaacaaggcaaagacggagacccaggagctccaggatacccaggacttaaaggagag
cctggaagtccaggtctcccaggccgagatggagagagagggcaaaaaggcgaccgagga
tttccgggacctccaggaccagtaattcggcctacgaatggagctgttgttggtcaaaaa
ggtgaacccggttttcctggaaatcctggagccaaaggagaaagaggaccgtcaggtttc
ccagggcctcagggagcaccaggaattcctggaataggtggcagcggtcctccgggtcct
ccaggtttccctggagacaaaggtcagaaaggagacccaggcactccttcgaatgccttg
cccggtcccccaggacgtccgggaaatcccgggaatcctggtccacaaggggcgcgtgga
cctcccggctattcatcaccgatcgataactgccttcctggagatcctgggcttcctgga
atccagggtcaaaaaggtttccctggagagcaaggccagaaaggtcagaagggagaaacc
tgtgtgaactgcattgacggaggcaatcttataccggggcccccagggcctccaggtccg
ccaggcttcgcaggccctcctggcccgccaggtgtaaagggagaaccaggttttcaagga
ataacaggtcttagtggaccccctggtgttcctggtcctgtaggtgctccaggtttcccc
ggagagaaaggagagccaggagataccttcggaggtggtggtgtgaaaggagagaagggt
gacagtggtttccctggaccacccggtctgcctggcctggatggtcgacccggtcgtgac
ggagcgcctgggcctcctggccccaagggagctcctgggtctctgctcttaaaaggagaa
cgaggtccccctggtgacacaggtccgcccggcatcccaggagacagaggtccaccaggc
ggccctggctatggagtcccgggtccaccaggggagaaaggtgctcaaggcaactcagga
gcacctggcaatcccggaaatccaggtgtaaaaggtgaaccaggtccgacagtcacagag
aagggtcaaccaggacccaaaggaatagatggcaacccagggtcacccggtccgccaggt
ccgcgaggtgcggatggacagcctggttcaccaggttttcctggaccaaagggtgaaccg
ggacaaccgggtgtcggccttccaggtcctgcaggagttaagggattcccaggtattccg
ggccagccgggaacacctggaaaagcagggagaccgggaatagatggattccccgggcca
ccagggtttcctggaccaaagggtgaggcaggctttggacttcctggtcctccaggtcca
cctggaatagcaggagctaaaggattccctggacaaaagggagatcctggtttccccggc
aacccaggtggaccagggcgacctgggtttgatggcggaccaggacttaaaggggagccc
ggctcaccaggccaacctggacctcgtgggccccctggaagctcaacaagtggtgcacag
ggtcctccgggccctcctggaccccccgggccaatgggaccaataggatacccaggagga
agtggagagaaaggagacccaggtccaccaggcttagacatcccagggttaccaggtgac
agagggaatcctggttttcctggaccccctggaccaataggaatcccaggaccccctgga
ggacctggaagggacggcgcacctggatttccaggtccaaaaggtgacatgggtcaaata
ggacctccaggaccatctggaggacctggcactccgggaggacctggtgcacctggtctt
aaaggtgaaccaggatttccaggcagtaacggcatcccaggtggacctggttctaaagga
gaaaagggagacccaggttccccgggactcccaggacccatcgggccagtagatataaga
ggagctaaaggagatcctggaactccaggatcaccaggctttcccggacccaaaggcatt
gcaggtctccctggtgaccctggattgcctggacaagatggacgccctggcattcctggt
ccaccagggctaaagggagaacctggtatcccagggagtcctggtggtcctggatctcca
ggtccaaaaggcacaatgggcgatatgggaattccaggacctatggggtcaaaaggctca
ccaggttttcaaggtaggccaggatccccaggtcagccaggaatacctggcctccaagga
ccaaaaggtgacccaggttctggtggtgttggaccacctggaccacagggacaaaaggga
gatccaggtcagcccggattcccaggaagtcctggagctaaaggaggtccgggaacacct
ggtcttcctggtttaccagggctaccgggggttaaaggagatgtaggcctcgcaggattc
caaggtcctcctggtttccccggtccaaagggtcttgatggtgtgcctggtgcccctggt
ctcacaggagctccaggtagaccaggagagtctggtcgaacaggaccaccaggacaggtt
ggggagaagggtcagccgggaagagatgggatcccaggaccagccggtgtcaaaggagaa
ccaggaattcctggctttggtgttccaggtcctcctgggattgcagggtcgccaggtgaa
aaaggaaacccaggccttcctggtcctagtggaggcccaggatttcctggcccaaaaggg
gacaccggctttccaggtccaccaggttctccaggtgtcagtggccctccaggtcctccg
ggactgccattccagggccctaaaggaaatcaaggacctcccgggccgcctggaagatca
gggcccgcaggtcctccaggtgtgcctgggccagagggtccccgcggtctcccaggaagt
ggcggcgttaagggagagaaggggaatcccggaaatccgggtctgcccggccagcctggt
caaaaaggagatcctggttttccaggagcaccaggcccctctggtggtcctggtggccct
ggtcctaagggagatagaggatttccaggcgttaccgggttctcaggaccaaagggagag
ccaggatttcctggtcccagtggacttcctggagatcctggggccgatggagcacctggc
cctcctggagatcctgggtcttcatcacctattgattatgtgaaaggagagcaaggacct
ccgggtccaccaggaagcccgggtgctacaggcccacctggtccgcctggagcccctgga
tcctcaggtctaccaggcccctctggagatcccggctcacctggtcccccaggcttcaac
ggcccacctggcagaaagggagacaccggacccccagggcaatctggccaaaagggcaac
cctggcccacctgggtcagatggtccacagggtccgccgggtcttccgggctcagggtca
gcggcccatggcttcctcctcacccgacacagccagagcgaaataacgccagagtgtcct
tccggaaccaacttcatctacgacggatactccctgttgtacgtgcaaggcaacgagagg
gcccatggacaggaccttggcaccgctggcagctgtctgcgccggttcagccccatgcct
ttcatgttctgcaacatcaacaacgtctgcaacttcgctgcccgtaacgactactcctac
tggctgtcaactttggagcccatgcctatgtccatggaggctgtgactggagacagcatc
aagccgtacatcagcaggtgtgctgtgtgtgaagctccagccatggtgattgcagtccac
agccagaccatccagattccctcttgtcccgcaaactggagatccctgtggatcggattc
tccttcatgatgcacactagcgcaggtgccgagggctccggtcaggccctggcctctccc
ggctcctgcctggaggacttccgcagcacgcccttcatagagtgccatggcagagggtcg
tgtaactacttcagcaactcctacagcttctggctggctactgtggagaaacttgacatg
ttcaagaaaccccagtcagagactttaaaggcaggcaacctacttacacgtgttagccgc
tgtgtggtttgcatgaagacaacgtaa
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integrated database retrieval system
