Poecilia mexicana (shortfin molly): 106930905
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Entry
106930905 CDS
T08022
Name
(RefSeq) collagen alpha-1(XXVII) chain A-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106930905
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmei00536
]
106930905
Glycosaminoglycan binding proteins [BR:
pmei00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106930905
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
106930905
NCBI-ProteinID:
XP_014864250
LinkDB
All DBs
Position
Unknown
AA seq
1003 aa
AA seq
DB search
MNLGTRRRDCRTSHLDTKRALLLCAVLYCTCYLGHTQEHSEDVDILQKLGLKGQKLSRSV
PEGVIPFRAGIILNQRAHIEAPLHSVLPAAIWPKLALVLSVRSHRVNSAFLFTLLSSNKK
LLLGLQLVPGSLVLHTGPNTSVTLPYEPHDGQWHQLALGINGKTVTLYASCGEQSVQADF
GWDSEEGLAPGRQGSFLLGKSSQHQASGYFEGAICQFDLVPSAQAAHNYCKYIKKQCREA
DTYRPNLSPLLPILPRVTNISATPATPKRGGSDAARKTTKSSLARNVAAAASSVRYGAPD
HKKKLNQTTTPAPLLVTVMPTTSQLGLVVPSSITKTETVTAPLRTPAQHTKSPLTPSLKA
SDHKTAKPTPPKPTHQSTSKETITRTDKKKLTTQATKSPKTKLDTVLHDQARVPNQPQPT
TPKKILPKSKVSPSKAPLPNSKSDYVKAIPSKPTLSKAKSSKSTVSKTTTAKPPKPISKQ
TTNPTKKPKTTKASVTPRPTTPTDNAVTPPATDGFLSWEVPPTQFSMLTGPKGEKGDPGP
PGLPGPSGKPGLPGKRGPRGDPGPHGNPGRPGPPGLKGKKGDPGISPGPAPKGEKGDSGI
IGPVGQPGQEGRKGQKGHPGPAGLPGETGEQGPIGSPGAKGYPGRQGLPGPIGPKGLKGV
RGFIGIPGLFGLPGPDGERGIPGEPGKRGKMGRPGFPGDFGERGPPGPDGEPGGLGAPGP
NGVPGLIGDMGPGGEMGPPGPVGLKGVPGNSGEPGLKGDKGDVGIPGQQGEIGFKGDKGI
QGAPGLPGIRGKPGPQGKLGEKGPDGAPGPPGPEGFPGDMGPPGENGVEGPKGKIGDRGL
PGPRGIPGLEGDEGPIGPPGPSGLEGRMGRKGFPGKVGPEGVKGEAGVPGKVGSMGEQGL
VGFIGPVGEAGLAGEKGDRGEMGLPGPPGVKGSTGHPGTPGETGPPGPPGRPGPAGASGP
AGTRGPKGLRGAMGPDGPTGEMGSEGKKGSDGPPGKIGFPGSQ
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaggcacccgaaggagagattgcagaacctctcatctagatacaaagagagcc
ctattgctctgtgcagttttatattgtacttgttacctgggacatacacaagaacactct
gaagatgttgatatcctccaaaagttggggcttaagggacagaagctgtcacgttctgtg
ccagaaggggtcattccattcagagcggggatcatcctcaaccagagggcgcatattgag
gctccgttgcactcagtccttccagcggccatctggcccaagttggcactggtcctgagt
gtacgctcacatcgtgtaaacagtgctttcctcttcactctgctttcaagcaacaagaag
ctccttcttggtctgcagcttgtaccaggtagtcttgtcctacacacaggaccgaacacc
tcagtgacactgccctatgagccccatgatggccagtggcaccagttggcactgggaatt
aatggaaagacagtgactctatatgcctcctgcggagagcagagtgtccaggcagacttt
gggtgggacagtgaggagggactggctccaggacgccagggctccttcttgctggggaaa
tcaagccagcaccaagcatcaggatactttgaaggagcaatttgccagtttgatctggtc
ccttctgcacaggcagctcacaactactgcaaatacattaagaaacaatgcagggaagct
gacacttacaggcctaacctttctcctctactgcctattctaccaagagtaacaaacatt
tcagctactcctgctacccctaagcgtggcggttcagacgccgcaaggaagaccacaaag
tcgagccttgccaggaatgtcgccgctgctgcctcatctgtcaggtatggggcccccgac
cataaaaaaaagctaaatcagacaaccacacccgctcccctgctagtaactgtgatgcca
accacatcccaattgggtttggtcgtcccttcttccataaccaagactgaaactgtaaca
gcaccactcaggacaccagcgcagcacacaaaatctcccctaaccccaagcttgaaagcg
tcagatcacaaaactgctaagcccacaccaccaaagcctactcatcaaagcacctcaaaa
gagactataacaagaacagacaagaagaaacttaccactcaagccaccaaatcccccaaa
accaaacttgacactgttttacatgaccaagctagagtcccgaaccaaccccaacccaca
acacccaagaaaatactccccaagtctaaggtttctccatccaaagctcctttgcccaat
tccaaatcagattatgtcaaagctatcccctctaaaccaacactatccaaagcaaagtcc
tcaaaatcaacagtctccaaaactacaactgctaagcctccaaagccaatttctaagcaa
actaccaacccaacaaagaaacccaaaactaccaaggcttcagtcactcctcgaccgacc
acgcctacagacaacgcagtaacgccacctgccaccgatggtttcctgagctgggaggtg
ccaccaacacagttctcaatgctgacaggaccaaagggagagaaaggagaccctggccca
ccgggactgccaggaccttcagggaaaccaggcctgccaggcaagaggggtccgcggggt
gaccctggcccccatgggaatcctggtagacctggtccacctgggctaaaggggaaaaaa
ggagatcctggcatttcacctgggccagcacctaaaggagagaagggagactcagggatt
attggcccagttggacagcctggacaagagggccgaaagggacagaaaggacaccccggt
ccagccggacttcctggagagacaggagagcagggtccaatcggaagcccaggtgccaaa
ggttatcctggcaggcagggtttaccgggacctattggaccaaaaggactgaaaggcgtt
cggggtttcattggaatcccaggcctttttggcctgcctggccccgatggcgaaagagga
attccgggcgaaccagggaagaggggcaagatgggtaggccggggtttccaggggacttt
ggggagagagggccacctggaccagatggagagccaggtggtctaggagccccgggtccg
aacggagtccctggactaattggcgatatgggaccggggggagaaatgggccctcccgga
ccggttggactcaagggggtacccggaaattctggagaaccaggactgaaaggtgataag
ggggacgttgggattcctggacagcagggggagattgggttcaaaggagataagggtatc
caaggagctccaggtttaccgggcattcgtgggaaaccaggaccgcaggggaaactagga
gagaaaggtcccgatggagcacctggcccaccaggccctgagggtttccctggtgacatg
ggaccaccgggagagaacggcgttgaaggaccaaagggaaaaataggagacagaggttta
ccggggccccgaggaattcctggcctagagggagacgagggtccgatcgggccaccggga
ccatcaggacttgagggtagaatgggaagaaaaggatttcctgggaaggttggcccggag
ggagtgaagggagaagccggtgtcccaggaaaagttgggtccatgggagaacaaggattg
gtgggtttcatcggacctgtgggagaggcagggctggcaggagagaagggagatcgagga
gaaatgggccttcccggaccacccggagtaaaaggatcaacgggtcacccagggacgcca
ggtgagactggacctcctggacctccaggaagaccaggccctgccggagcaagtgggcca
gccggcaccagaggacccaaaggcttgcggggagcaatggggcctgatggtccaacagga
gagatggggtcagagggcaagaagggttccgatggtcctccaggaaaaataggtttccca
ggatcacag
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