Poecilia mexicana (shortfin molly): 106932988
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Entry
106932988 CDS
T08022
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03008
Ribosome biogenesis in eukaryotes
pmei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106932988 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
106932988 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106932988 (xrn1)
03009 Ribosome biogenesis [BR:
pmei03009
]
106932988 (xrn1)
03016 Transfer RNA biogenesis [BR:
pmei03016
]
106932988 (xrn1)
03036 Chromosome and associated proteins [BR:
pmei03036
]
106932988 (xrn1)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
106932988 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
106932988 (xrn1)
Ribosome biogenesis [BR:
pmei03009
]
Eukaryotic type
Pre-60S particles
RNases
106932988 (xrn1)
Transfer RNA biogenesis [BR:
pmei03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
106932988 (xrn1)
Chromosome and associated proteins [BR:
pmei03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106932988 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
106932988
NCBI-ProteinID:
XP_014867468
Ensembl:
ENSPMEG00000003076
LinkDB
All DBs
Position
Unknown
AA seq
1575 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHKIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALDKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKVSTDKLWQNVKVFLSGHETPGEGEHK
IMEFIRSENAKPNHDPNTRHCLYGLDADLIMLGLTSHEHNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSELKRHLGSDYDLERIIDDWILMGFLVGNDFIPHLPH
LHINLDALPLLYKTYVSVLPSLGGYLNENGYLNLRNFEKYLEKLSEFDREHFSEVFVDLK
WFESKIGNKYLNESAGLAAEQEAAIRAGRKTEDSSIHLTTLTSSKKVTEQEKDDVADDEE
EEEEEDEMFETEFRQYKRTYYMTKMGVDVVSDEFLAKQAKCYVEGIQWILHYYYHGVQSW
SWYYPFHYAPFLSDIRNISELKLTFDLGKPFMPFQQLLAVLPAASKELLPEGYRDLMTSP
NSPIIEYYPLDFKTDLNGKQQEWEAVVLIPFIDETCLLAAMEPFSSKLTKEEKARNRHSE
CAMYSYDPDTDFTYASSLPKLFPNIVHCHAREVRIPVDAWHVPSDHVSKRVDRSTLYFCG
FPTLHHIKHKFYKKKSGVVVFQQSSRGENMILDILPSQDGETICDHVAADLLGKPVFVNW
PHLEEARVIAVSDGETKFALEEPPGVQQVYDRPSSPPPTKVSYLSDKEQKDWVKDVQGIT
EHFFKRKGIAVNETTVLLYGQMLTGRKYVPKASGVVELEKQWAKQVLPFAYQTVVKDIKA
FYSSLTCFKSLDELFPPSTTVFMVGSPYYGAMGEVQDSQDVIKDGRIRVVFSVPHEPQLE
HLIQNQHKYSVKYCPGYVLASRLGVSSYLVSRFSGSIFIGRGSKKNPCGEQRANVGLNLK
FNKKNEEVPGYTKRTEKEWLYSAAVEELLAEYLDRFSEVFDAVSRNSHDDVFYEDDIWPG
EDQNGAEKVAEITSWLKSHPVSSTSRASCDLQVLDSAIVEKIEEAVEKTKVKKSTKKVRV
TVKPHLLFRPLEQQQGVVPDPDAEYRLFDRVVNIRESFTVPLGHRGTIIGIKGADREAEV
LYEVLFDEEFAGGLNIRCTSPRGYRLPPCALINLSHGTRLDHGSHKLTAIVKPQPATSAN
FNMQRLAGLNHSPRSPFVPTQHNKNAVAPQGNKTPSKGPNQKQQAKSKEEYSNVWQSLQK
TGPPSQPPAHWHNNEAALQQGKNQRSSKAIPASGIRLLKKNEDVNSFFPPKNTANKGTTE
FEVLIANLKISQGNQQTPPPPAPPEEPSNQSDGPLSPQSFAMKGTLVLKEMLKIDGAGKG
SPTSQESADAAPSAGQQQNRRRSSKKLAAKINNPPGESVTLASPAPAASAHAALGGKVSE
LACFCVGVGMAPPDFSFIRNRQGPVVCQVKLSNGLMIHGPQCQSENEAKEKAAFFALQRL
NSLGSGLPLPPHLYPGMAQMQPPPMGAMPPVFSQQGQCVALIVCIREPQWVLLCLNVRDS
DILEKSSQPHLGKLG
NT seq
4728 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgccgaaattttaccgctggatttctgaacgctatccttgcctcagtgaagtt
gtcaaagaacacaagattccagaattcgacaacctttatctggacatgaatggcatcatc
caccagtgctctcacccaaatgacgaagacgtccattttcgcatctccgaggagaagatc
tttgcggacattttccattacctggaggtactgtttcggatcatcaagccacgcaaggtc
ttcttcatggctgtggacggtgtggcaccaagggcaaagatgaaccagcagagaggacgc
agattcaggtccgccaaagaagcagaggagaagattaaaaaggctctggataaaggagag
gttcttccaacagaagctcgctttgactccaactgtatcactcctggcaccgattttatg
gcgagactacaggaacagctcaagtactttgtccacaacaaggtgtctacagacaagctg
tggcaaaacgtcaaagtcttcttgtcgggtcacgagacaccgggtgaaggagaacataag
atcatggagtttatccgttccgagaacgccaaaccgaatcatgatcccaacacccgacac
tgcctgtatggcctggatgctgacctgatcatgttgggcttaaccagtcatgagcataat
ttctccctgctcagagaggaagtccgctttggaggaaaaaaatcccagaaaagaataacg
gctccagaggagacgactttccacctgctgcatctgtctctgatgagggagtacatcgac
tacgagttctcagagctgaagcgtcatctgggttctgattatgatctggagcgaataata
gacgactggatattaatggggttcctcgtaggaaacgatttcatccctcacctccctcat
cttcacattaatcttgatgctttgccgctgctgtacaaaacttacgtcagcgtactgccc
agcttggggggttacctgaatgagaacggctacttaaacctcagaaattttgagaaatac
ctggagaaactttctgagtttgaccgggaacactttagcgaagtgtttgtagacttgaag
tggttcgagagtaaaatcggcaacaaatatctgaatgagtcggccggtctggcagccgag
caggaagcggcgatccgagccgggagaaagacggaggactcttctattcatctcaccacc
ttgacctcatcgaaaaaagtgactgaacaagaaaaagacgacgtggcagatgatgaggag
gaggaggaggaggaagatgagatgtttgaaacagagttcagacaatacaaacggacatac
tatatgaccaagatgggcgtggatgtggtgtctgatgaatttctcgccaagcaagccaag
tgctacgtggaaggcatccagtggattcttcactactactaccatggtgttcagtcgtgg
agctggtactaccctttccactacgccccgtttctgtcggacatccgaaacatatcagag
ttgaagctgacctttgacctcgggaaacccttcatgcctttccagcagctgttggctgtc
ctgcctgctgccagcaaggagctgctcccagagggctacagggacttgatgaccagtcca
aactctcccattatcgaatactatcctcttgacttcaaaactgacctcaatggaaagcag
caggagtgggaagctgtggtgctcattccgttcatagacgagacgtgccttttagcagct
atggagcctttcagttccaaactgacgaaggaggagaaggccaggaaccggcactcagag
tgcgccatgtactcctacgacccagacacggacttcacatacgcctcctccctgccgaag
ctcttcccaaacatcgtccattgtcacgccagggaagtccggatccccgtggacgcctgg
catgtgccgtcagaccacgtcagcaagcgcgtcgaccgctccactttatacttctgcggt
ttccccactctgcaccacatcaagcacaagttttataagaagaagagcggagtggtcgtg
ttccagcagagcagcagaggagaaaacatgattctggacatccttcccagtcaggatggg
gaaacgatatgtgatcatgtagctgcagaccttttggggaagcctgtgtttgtcaactgg
ccccatctagaggaagctcgtgttattgcggtatcagacggagaaaccaaatttgctcta
gaggagcctcctggagtccaacaagtgtacgacaggccgtccagtcctccacccactaaa
gtgtcttatctatctgacaaagagcagaaggactgggtgaaggacgtccagggaatcact
gaacatttcttcaagaggaaaggcatcgcagtgaatgagacaacagtgcttttgtacggt
cagatgctgacaggaaggaagtacgtccctaaagccagtggagtggtggagctggagaaa
cagtgggccaaacaggttctcccattcgcctaccagactgtggttaaggacatcaaggcc
ttttactcgtctctgacctgctttaagagtttggatgaacttttccctccatcaacgaca
gtcttcatggtgggaagcccttactatggtgccatgggagaggttcaagactctcaagac
gtcatcaaagacggtcggatacgggtggttttcagcgtgcctcacgagccgcagctggag
cacttgatccagaatcagcataaatactcggtcaagtactgcccaggctacgtcctggct
tcccgcctcggcgtcagcagctacctcgtctcccgcttctcgggaagcatcttcatcggc
cgaggctccaagaagaatccgtgcggggagcaaagagctaacgttgggctcaacctgaag
ttcaacaagaagaacgaggaggttcccgggtacaccaagagaacggagaaagagtggctc
tactctgctgccgtggaggagctgcttgctgaatacctggacagattttcagaagttttc
gatgcagtgtccagaaacagtcacgacgatgtgttctacgaagacgacatctggccggga
gaggatcagaacggggcggagaaggtggctgaaatcacctcgtggttgaagagtcatcca
gtcagctccaccagccgggcgtcatgcgacctccaggttctggactccgccattgtggag
aagatcgaggaagccgtggaaaagaccaaggtgaagaagagcaccaagaaagtccgcgtg
acggtcaagcctcatctcctgtttcggcccctggagcagcagcagggcgtggtcccagac
cccgacgccgagtaccggctgtttgacagagtcgtcaacatcagggagagcttcactgtc
ccgctgggacacagagggacgatcatcggcattaaaggagcggaccgcgaggctgaggtt
ctctacgaggttctgtttgacgaggaatttgctggaggtcttaacatcaggtgcacctcc
ccccgcggttaccgcctccctccctgcgccctcatcaacctgtcccacggcacccggctg
gaccacggctcccacaaactcaccgccatcgtcaaaccgcaaccggccaccagcgccaac
ttcaacatgcagcgcctggcgggcctcaaccactcgcctcgctcgccctttgtacccacc
cagcacaacaagaacgccgtggcgcctcagggtaacaaaaccccatctaaaggtcccaac
cagaaacaacaagctaagtctaaggaggagtacagcaacgtgtggcagtcgctccagaag
accggtcctcccagccagcctccagctcactggcacaataatgaagcagctttacaacag
ggaaagaatcagcgttccagtaaagctattccagccagtggcatcagactattaaagaaa
aatgaagacgtcaactccttcttccctccaaagaacacagccaataagggcaccactgag
tttgaggttctcattgcaaacctaaagatctcccagggcaaccagcaaaccccaccgcct
cctgcccctccagaggaacccagcaaccagtcagacggcccgttgtccccccagtccttc
gccatgaaaggaaccctggttctgaaggagatgctgaagatcgacggcgctggaaaagga
agtccaacatcccaggagtcggcagacgctgctccctctgctggccagcagcagaacaga
aggcgatcaagcaagaagctggctgcaaaaataaacaaccctcctggcgaatccgtcacg
ctggcctctccagcgccggctgcctctgctcacgccgccctgggcgggaaggtgtcggag
ctggcttgcttctgcgtgggcgtaggcatggccccgcccgacttcagctttatccgcaac
cgacagggtccggtagtgtgtcaggtgaagctgtccaatgggttaatgattcacggacct
cagtgtcagtcagaaaatgaagctaaggagaaagctgccttctttgccctccaaagactg
aactctctgggctctgggttgcccctccctcctcatctatatcccgggatggctcagatg
cagccgccgccgatgggagccatgccgccagtcttcagccagcaaggtcagtgtgttgct
cttatcgtctgcatcagggagcctcagtgggtgcttttgtgtttaaatgtgagagattct
gatatactggagaaatcctcacagcctcacttgggcaagcttggctaa
DBGET
integrated database retrieval system
