Poecilia mexicana (shortfin molly): 106933245
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Entry
106933245 CDS
T08022
Symbol
cnot6l
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106933245 (cnot6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106933245 (cnot6l)
Enzymes [BR:
pmei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106933245 (cnot6l)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106933245 (cnot6l)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106933245 (cnot6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
LRR_9
type_II_gspD_N0
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
106933245
NCBI-ProteinID:
XP_014867861
Ensembl:
ENSPMEG00000015834
UniProt:
A0A3B3YR43
LinkDB
All DBs
Position
Unknown
AA seq
552 aa
AA seq
DB search
MPKEKYDPPDPRRCYTIMSAEEAANGKKSHWNELEITGRVRSLSSSLWTLTHLTALHIND
NNLTRIPPDIAKLPNLVYLNLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQEPDGTRKLLNYMLDNLAVHPEQLPQRPWITLKERDQMSP
TAAFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITSCDADIISLQEVETEQ
YYTLFLETLKDRGYDGYFCPKSRAKLVSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLEVNKNMFSSGVKPQERQLLLVANAHMHWDPEYS
DVKLIQTMMFLSELKSIAERASGAMTTDSPTSDPSSIPIVLCADLNSLPDSGVVEYLSNG
GVAENHKDFKELRYSECLTNFNCNGKNGNSDGSITHSFQLKSAYDSNLMPYTNYTYDFKG
VIDYIFFSKTHMSAVGVLGPLDSQWLVDNNITGCPHPHIPSDHFSLLAQLELHPPAPHPL
NPLNGLHLPVHR
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagatccccgcagatgttacaccatcatgtcagct
gaggaggcggccaatgggaagaagtctcactggaacgagctcgagataaccggacgagtc
aggagcctgagcagctcgttatggaccctcacgcatctgacggcgctgcacatcaacgac
aacaacctgacccgcatcccgccggacatcgccaagctgcccaacctggtctacctgaac
ctgtcgtccaataagctgcgcagtctgcccgccgaactgggcaacatggtctctctcagg
gaattgcttttaaacaacaatcttttacgagtcctgccttatgaactgggccggcttttc
cagcttcaaactctgggactaaaaggaaatccgttatcgcaggacatcctgaatctgtac
caggagcccgacggaaccagaaagcttttgaactacatgctcgacaatctggcagttcac
ccagagcagctcccccaaagaccgtggatcaccctgaaggagcgagaccagatgagccca
acagctgcgttcacagtcatgtgctacaacgtgctgtgcgacaagtacgccacgcggcag
ctctacggctactgtccgtcctgggcgctgaactgggagtaccggaagaaaggcatcatg
gaggaaatcaccagctgtgacgccgacatcatcagcctgcaggaagtggagacggagcag
tactacaccttgttcctggaaacactaaaggaccgcggctacgacggctacttctgcccc
aaatcccgcgccaagctggtttctgagcaggagaggaaacacgtcgacggctgcgccatt
ttcttcaagaccgagaagttcactttggtccagaaacacaccgtggagttcaatcaggtg
gccatggccaactctgaggggtcagaggtcatgctgaacagagtgatgaccaaagacaac
atcggcgtggcggttctgctggaggttaataagaacatgttctccagtggcgtgaagcct
caggagaggcaactacttcttgtggccaacgctcacatgcattgggacccggagtactcg
gacgttaagctgatccaaaccatgatgtttctgtcggagctgaagagcatcgctgagaga
gcctcgggtgccatgacaacggactccccgacctctgacccctcatccatccccatcgtc
ctgtgtgccgacctcaactcgctgcccgactccggtgtggtggagtacctgagcaacggc
ggggtggctgaaaaccacaaggacttcaaggagctgcgctacagcgagtgtctcaccaac
ttcaactgcaacggcaagaacggcaactcggacggcagcatcacacacagcttccagctg
aagagcgcgtacgacagcaacctgatgccttacaccaactacacatacgacttcaagggc
gtcatcgactacatcttcttctccaagacacacatgagcgccgtgggcgtcctgggcccg
ctggacagccagtggctggtggacaacaacatcaccggctgcccccacccccacatcccc
tcggaccacttctccctgctggcccaactggaactgcatccccctgctccccacccgctc
aaccccctgaacggcctgcacctgcccgtccacaggtag
DBGET
integrated database retrieval system
