KEGG   Poecilia mexicana (shortfin molly): 106933823
Entry
106933823         CDS       T08022                                 
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
pmei  Poecilia mexicana (shortfin molly)
Pathway
pmei03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmei00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106933823 (lsm1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmei03019]
    106933823 (lsm1)
Messenger RNA biogenesis [BR:pmei03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106933823 (lsm1)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     106933823 (lsm1)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 106933823
NCBI-ProteinID: XP_014868805
Ensembl: ENSPMEG00000023550
UniProt: A0A3B3XZH0
LinkDB
Position
Unknown
AA seq 133 aa
MNYVPGTASLIDDIDKKHLVLLRDGRTLIGYLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEMDVDKPCDTILQQVSIEEILEEQRLQQQAKQETEKVKMQVLKDR
GLSIPKADNLDEY
NT seq 402 nt   +upstreamnt  +downstreamnt
atgaactacgtaccagggacggcaagcctcattgacgacatcgacaaaaagcacctggtg
ttgctccgagatggcagaactctgattggttacctcaggagcatcgaccagtttgccaat
ttagtgtttcaccagacggtggagcgcatccacgtggggaaaaagtttggagacatcccg
agaggaattttcatcgtgagaggggaaaacgtagttctgcttggagagatggacgtggat
aagccctgcgataccatcctgcagcaggtctccatcgaagagatcctagaggagcagcgg
ctgcagcagcaagccaagcaggagacggagaaagtcaagatgcaggtcctgaaggatcga
ggcctttccattcccaaagcggataacttggacgagtactaa

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