Poecilia mexicana (shortfin molly): 106934061
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Entry
106934061 CDS
T08022
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106934061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmei03041
]
106934061
03009 Ribosome biogenesis [BR:
pmei03009
]
106934061
Enzymes [BR:
pmei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106934061
Spliceosome [BR:
pmei03041
]
Complex A
U1 snRNP components
U1 related factors
106934061
Complex B
106934061
Ribosome biogenesis [BR:
pmei03009
]
Eukaryotic type
Pre-60S particles
Helicases
106934061
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
106934061
NCBI-ProteinID:
XP_014869203
Ensembl:
ENSPMEG00000018534
UniProt:
A0A3B3XLL9
LinkDB
All DBs
Position
Unknown
AA seq
634 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGGPPRFGGSRSGGGGKFGNPGERLRKKHWNLDELPKFEKNFY
QQHPDVARRSLQEAEQYRRSKTITVKGRDCPNPITQFHEASFPSYVMEVINKQNWTEPTP
IQAQGWPLALSGMDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSTCIYGGAPKGPQLRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INIGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQAGDLVSVLREANQAINPKLLQMAEERG
GRSRGGRGGDYDRRDRYSSGRRDYGGGRDRDNNRGYNNGPNKGYGAGSQNGGYGGSNGAS
NGYGGGNYNTNGQSNFGTNQAGAFVAQNNFQAQQFVPNKPVAQNGTSHPQYQFPQAQVPP
QLPPQPQHPPQQLAPQQHPPPPLVPYPMPPQFSQ
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagaccgcggcagagatagagacagaggttatggcggtggt
ccaccccgattcggtggcagccggagtggaggtggaggaaagtttggcaatccaggtgag
cgattgaggaagaagcactggaacctggatgagctcccaaagtttgagaaaaacttctat
cagcagcatcctgatgtcgcccgtagatcactgcaagaagctgagcaatacagaaggtcc
aaaactattacagtgaaggggagggactgcccaaatcccataactcagttccatgaagca
agctttccctcttatgtgatggaggtcatcaacaaacagaactggactgaaccaacacct
atccaggctcagggttggcctttggctctcagtggcatggacatggttggcattgcacag
actggctctggcaagacactttcttatcttctgcctgcaatcgtgcacattaatcaccag
cctttcttggagcgtggggacggtccaatttgtctggtgttagcccccactcgtgagctg
gcccagcaggtgcaacaggtggctgctgaatatggcagagcttctcgtctgaagtccacc
tgcatctacggaggcgcaccaaaagggcctcagctccgtgatttggaaagaggtgtggag
atttgcatcgccactccgggcaggctcattgacttccttgaagcaggaaaaacgaacctt
cgcagatgcacttacctggtgctggatgaggcagacagaatgctggacatggggtttgag
ccacagatcaggaagattgttgaccaaatcaggcctgacaggcagactctgatgtggagt
gctacttggcctaaagaggttcgccaactggcagaagactttctgaaggagtatgttcag
atcaacattggtgcactgcagcttagtgctaaccataacatcctgcagattgtggatgtc
tgcaatgatggagaaaaagagaataagctaatccgtctgcttgaggaaatcatgagtgag
aaggagaacaagaccataatttttgttgagacaaaaaggcggtgtgatgacctcactcga
cgaatgagaagagatgggtggccagctatgggaatccatggtgacaaaagccagcaggag
agggactgggtccttaatgagttcaaatttggcaaagcccccatactgatcgccactgat
gttgcgtccagaggcctagatgtggaagacgtgaaatttgtcatcaactatgactaccct
aacaactctgaggactatatccatcgcattggcagaacggctcgtagccaaaagactggc
acggcctacaccttcttcactcccaacaacatgaggcaggccggcgacctcgtctctgtg
ctgcgcgaggccaaccaggcaattaacccaaagctcctccagatggcagaagaaagagga
ggtcgttcaaggggcggcagaggtggtgactacgaccgtcgggataggtattcctctgga
aggcgtgattatggcggcggtagggatagagataacaatagaggatataacaacggacca
aacaagggttatggcgcaggttctcagaacggaggctatggaggcagcaacggtgccagc
aatggttacggtggagggaactacaacaccaatggacagtcaaacttcggcaccaatcaa
gcaggagcttttgttgcccaaaacaacttccaggcccaacagtttgttcccaataagccc
gttgcacaaaatggcacaagccatcctcagtaccagttccctcaggcccaggtgcctcct
cagcttccaccccaacctcagcatccaccccaacaacttgcccctcaacagcatcctccc
ccgccactggtgccgtatcccatgcctccacagttctctcagtaa
DBGET
integrated database retrieval system
