Phyllobacterium meliloti: LLE53_005220
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Entry
LLE53_005220 CDS
T11258
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmel Phyllobacterium meliloti
Pathway
pmel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLE53_005220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmel03019
]
LLE53_005220
03009 Ribosome biogenesis [BR:
pmel03009
]
LLE53_005220
Enzymes [BR:
pmel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LLE53_005220
Messenger RNA biogenesis [BR:
pmel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LLE53_005220
Ribosome biogenesis [BR:
pmel03009
]
Prokaryotic type
rRNA processing factors
LLE53_005220
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TFIID_NTD2
Motif
Other DBs
NCBI-ProteinID:
UGX87239
LinkDB
All DBs
Position
complement(1075889..1078807)
Genome browser
AA seq
972 aa
AA seq
DB search
MSDKMLIDASHQEETRVVVVRGNRIEEFDFESEHKKQIKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEAEAASQDEDHEEAAGEQRSRDRNDRGQ
RNRRGRSRRGTRQGDDTVKLDAADEENASAGEAGDAHESSEQGGSDENPSSEDNGGQTLA
AAIDADVISEAIIVETDEATDSEEKADESDNHARKSKRRSQDDKEEPHDELDEVDSIGAE
DAMEEVPTHQRFQRRQYNIQDVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMP
NTARGGGISRKITSIQDRKRLKDIVKDLEVPKGMGVILRTAGAMRTKPEVKRDYEYLMRL
WENVRSLTLASSAPTLVYEEGSLIKRSIRDLYNKDITEILVAGENGYREAKDFMRMLMPS
HAKVVQPYRELTPIFARNGIEAQLDRMLQPQVTLKSGGYIIINQTEALVAIDVNSGRSTR
EHSIEDTALQTNLEAADEVARQLRLRDLAGLIVVDFIDMEENRNNRAVEKRMKDCLKDDR
ARIQVGRISHFGLLEMSRQRIRASVLESTTQVCAHCGGTGHVRSASSIALHVMRSIEEYL
LRHSQNNIIVRTTVATALYVLNHKRQNLADLETRFGLTISIEADDSVGAQHFAIDKGSIA
LGPIVPLTETPALGVIDDFDETDPVIEEIDDEAESEAQPGETARTGDNDESSRKRRRKRR
RRGGRDRQDVAAGEPGQAVRGDTDSDDADVPAVEGEDAAATKAREEENERRKKRRRGRRG
GRKNRRPEDGEDHQIAAKSVPDAEPVFVSIPLPDFSKPAAVETKATAVEEAVFVESTIVE
VVADAEPASAEEAPAKPKRAPRKPRAKAGAEPAETVAEVVSVEAEAPAKPKRAPRKSAKK
AVAEETVAEVVAVEAPASTPVEVEAAPEPVVAPKPEPKVENAAPVVTSSSTKDKKDGEAS
PKRGWWQKKGFF
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacaaaatgctaatcgacgcctcccaccaggaggaaacgcgcgttgtcgtggtt
cgcggcaaccgaattgaagaatttgactttgagtcggaacacaagaaacagatcaaaggc
aatatctatctggcgcgtgtcacacgtgtagaaccatcgcttcaggcagcattcgttgaa
tatggcggcaatcgccatggctttctggcgttcagcgaaatccatcctgattactaccag
atccctgttgcagaccgtcaggcgctgatcgaggcggaagccgaggcagccagccaggac
gaagaccacgaggaagctgccggtgaacagcgcagccgggatcgcaatgatcgcggccag
cgcaatcgccgtggccgcagccgtcgtggcacccgtcagggtgacgatacggtcaagctt
gatgctgctgacgaagaaaacgcatccgcaggcgaagccggtgacgcacacgaatcgtca
gaacaaggcggatcggacgaaaacccgtcttctgaggacaatggcggccagaccttggct
gctgccatagacgctgatgtcatttccgaagccattattgttgagacagacgaagctacc
gactccgaagaaaaggctgacgagagcgataatcacgcgcgcaaatccaagcgccgctcg
caggacgacaaggaagagccgcatgacgagcttgacgaagtcgattccatcggcgccgaa
gatgccatggaagaagttccgacgcatcagcgcttccagcgccgccagtacaacattcag
gacgttatcaagcgccgccagattctgctggtgcaggtcgtcaaggaagagcgcggcaac
aagggcgcggctctgaccacttatctgtcgcttgccggtcgctattcggttctgatgccg
aacaccgcgcgtggcggtggcatttcgcgcaagatcaccagcattcaggaccgcaagcgc
ctgaaggacatcgtcaaggaccttgaagtgcccaagggcatgggcgtaatcctgcgcacc
gccggtgccatgcgcaccaagcctgaggtcaagcgcgattacgaatatctgatgcgcctg
tgggagaatgtccgcagcctcaccctcgcctccagtgcgccgaccctcgtctatgaggaa
ggcagcctgatcaagcgctcgatccgcgatctctataataaggacatcacggaaatcctc
gttgccggtgaaaacggctaccgcgaggcaaaagacttcatgcgcatgctcatgccgagc
catgccaaggtggtgcagccctatcgcgagttgacgccgatctttgcgcgcaatggtatc
gaggcacagctcgaccgtatgttgcagccgcaggtcacgctgaaatccggtggctatatc
atcatcaaccagaccgaagcgctggtggcgattgacgttaactccggacgctcgacacgc
gaacattcgattgaagacaccgcgttacagacaaatcttgaagcggcagatgaagttgcg
cggcaattgcgtctgcgcgatcttgccggtctgatcgttgtcgatttcatcgacatggaa
gaaaaccgcaacaaccgtgcggtggaaaagcggatgaaggattgtctgaaagacgatcgc
gcccgcattcaggttggccgcatctcgcatttcggcctgctcgaaatgtcgcgccagcgc
attcgtgccagcgttctggaaagcacgacacaggtctgcgcacattgcggcggtaccggt
catgtgcgttccgcctcgtcgatcgcgctgcatgtcatgcgctcgatcgaggaatatctg
ctgcgccattcgcagaataacatcatcgttcgcactaccgtggcaacggcgctttatgtt
ctcaaccacaagcgccagaaccttgccgatctcgaaacccgtttcggtctgacaatcagc
atcgaggcggatgacagcgtgggcgcccagcatttcgccatcgacaagggctccattgcg
cttggtccgattgttccgctcaccgaaacgccagccctcggcgttatcgatgattttgac
gagactgatccggtcatcgaagaaatcgacgatgaagccgaaagcgaggcacagcccggc
gaaaccgcccgcactggcgacaatgacgaatcgtcccgcaagcgtcggcgcaagcgtcgt
cggcgtggtggtcgtgatcgtcaggacgtcgctgccggtgagcccggtcaggccgtgcgc
ggtgataccgacagtgacgatgcggatgttcctgccgttgaaggcgaggatgccgccgct
accaaggcacgcgaagaagagaacgaacgccgcaagaagcgtcggcgtgggcgtcgtggc
ggtcgcaagaatcgccgtccggaggatggtgaggatcatcaaatcgccgccaagtccgta
cccgatgcggaacctgttttcgtaagcattccgctgccggatttcagcaagcccgccgcg
gttgaaaccaaagcgactgctgtcgaagaagctgttttcgtcgaaagcacaatcgttgag
gttgttgcggatgcggaaccggcttctgcggaagaagcgccagcaaagccaaagcgcgcg
cctcgcaagccgcgcgccaaggctggagctgaacctgctgaaactgtagcggaagttgta
tctgtcgaggctgaagcaccggcaaagccgaagcgcgcccctcgcaagtcagccaagaag
gctgttgcagaggaaaccgttgcggaggtagttgcagtggaagcaccggcaagcacgcca
gttgaggttgaagccgcaccggaacccgttgttgcgccaaagcctgagccaaaagtggaa
aacgctgcgcccgtcgtcacgtccagttcaaccaaggacaagaaggacggtgaagcgtcg
ccgaaacgcggctggtggcagaagaagggtttcttctga
DBGET
integrated database retrieval system
